Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq31820 196 6e-45 seq25716 136 5e-27 >seq31820 Length=591 Score = 196 bits (216), Expect = 6e-45 Identities = 376/550 (68%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || ||||| |||||| |||| |||||| |||| || || | | ||| Sbjct 545 CCCGAGGAGATCTCGTCCATGGTGCTGATCAAGATGCGCGAGATCGCCGAGGCGTACATC 486 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || ||||| |||| || ||||| || || || || |||| || || || || Sbjct 485 GGCAAGCAAGTGAAGAATGCCGTGGTGACGGTGCCGGCGTATTTCAACGACTCGCAGCGC 426 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || || || |||||||||| ||||| || || || ||| || | || ||||| || Sbjct 425 CAAGCTACGAAGGACGCTGGCGCTATCGCTGGGCTGAACGTCCTGCGTATCATCAACGAG 366 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || ||||| ||||| || || ||||||||| |||| || || | || || Sbjct 365 CCGACGGCTGCTGCCATTGCCTACGGCCTGGACAAG---AAGGGCGGCGAGCACAACGTG 309 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 ||||||||||||| || || || |||||||| ||||| || || | || |||| || Sbjct 308 CTGATCTTTGATCTGGGAGGCGGAACGTTTGACGTCTCGCTCCTTACGATCGAAGAAGGC 249 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || ||||| || ||||| || || || || || || | ||||| ||||| || || Sbjct 248 ATCTTCGAGGTGAAGGCCACCGCAGGCGACACGCACTTGGGTGGCGAAGACTTTGACAAC 189 Query 195992 CGTCTTCTC-CGTCATTTGTCTGA-TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTG 196049 ||||| || || || | ||| || ||| || ||| | || ||| | | | Sbjct 188 CGTCTGGTCGAGTACTTCG--TGACCGAATTCAAGCGCAAGCACCGCAAGGATCTAACCG 131 Query 196050 GAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCT 196109 | || | | || | ||||| || | || || || || || || || ||||| || | Sbjct 130 GGAACTCGCGTGCGATGCGTCGTCTCCGTACGGCGTGCGAGCGCGCGAAGCGAACGCTGT 71 Query 196110 CTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATA 196169 | || |||| ||| | ||||||| ||||||||||| ||||| || |||||| | Sbjct 70 CCACTTCGGCGCAAGCGTATCTTGAGATCGATTCGTTGTTGGACGGTATCGACTTCAACT 11 Query 196170 CAACTATTAC 196179 | || ||||| Sbjct 10 CGACCATTAC 1 >seq25716 Length=729 Score = 136 bits (150), Expect = 5e-27 Identities = 343/512 (67%), Gaps = 21/512 (4%) Strand=Plus/Minus Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509 ||||||||||| | ||| | ||| || ||| | ||| || |||| | || || || Sbjct 639 TTCAAGGATGTGGCCGGTGTGGACGAGGCCAAGAAGGAGATCATGGAGTTCGTGGACTTC 580 Query 198510 CTTAAAAACCCCGAAAAGTACT--ATGGA-AGTGGTGCCCGAATCCCACGTGGTGCTCTT 198566 ||| |||| | ||| || | || |||||| |||||| || || || Sbjct 579 CTTCGCAACC---AGAAGCGCTTCACCGAGCTTGGTGCGAAAATCCCCAAGGGCGCGCTG 523 Query 198567 CTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCG 198626 | | ||| | || ||||| ||||| || || || || |||| || ||||| | Sbjct 522 TTAGTCGGACCTCCCGGTACGGGTAAGACGCTGCTGGCGAAGGCTACGGCTGGTGAGGCC 463 Query 198627 AGTGTCCCCTTTCTTCAG-TGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGG 198685 ||||| ||| |||||||| ||| | || |||||||||||||||||| ||||| || Sbjct 462 AGTGTGCCC-TTCTTCAGCATCTCTGGTTCGGATTTCATCGAGATGTTCGTCGGTGTGGG 404 Query 198686 TGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTT 198745 | || || || || || || || | || || | |||| || || ||| | || Sbjct 403 GCCGTCCCGTGTGCGTGACCTGTTCAAGGAGGCGCGCGCAAATGCCCCGTGCATCGTGTT 344 Query 198746 CATTGATGAGATTGACGCTGTTG-----GTAAGAAGCGTGGTGGAACTACTACACCTGGT 198800 ||||||||| ||||| ||||| | | | | ||| || | |||| || | || Sbjct 343 CATTGATGAAATTGATGCTGTGGCCCGCGCACGTAGCAAGG-GCAACTTCT-CGGGCGGC 286 Query 198801 AATGATGAGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGAC--- 198857 || || |||||||| | ||| | |||||| | || ||||||||||||||| || Sbjct 285 AACGACGAGCGTGAAAACACGCTAAACCAGTTGCTGGTTGAGATGGATGGTTTCAACTCG 226 Query 198858 AATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCA 198917 | |||| ||| | |||||| |||||| ||| || | ||| ||||| || | || Sbjct 225 AGTGAG---GGTGTGGTGGTGCTTGCTGGTACGAACCGCGCTGACATCCTTGACAAGGCC 169 Query 198918 CTGCTTCGTCCCGGTCGATTCGACCGTAAGAT 198949 | || |||||||||||||||||||| |||| Sbjct 168 ATTCTGCGTCCCGGTCGATTCGACCGGCAGAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657557028497200