Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq10768 185 3e-42 seq24639 98.7 3e-16 >seq10768 Length=4052 Score = 185 bits (204), Expect = 3e-42 Identities = 190/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569 |||||| |||||||| ||||| || || ||||||||||| |||||||| | || || Sbjct 1 TGTCGAG-TCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGT 59 Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA-GGCGACCAGCGAACCGGCCGCA 40628 || ||||||||||| ||||| || || || | || |||||| |||||||||||| | Sbjct 60 ACTTGAGCGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCC 119 Query 40629 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40688 || || || ||||| || ||| || ||||| | ||||||||| |||||||||| || Sbjct 120 GAACCACGGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCC 179 Query 40689 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40748 |||| |||||||| |||||||||||||| |||||| || || ||||| | | |||| Sbjct 180 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGC 239 Query 40749 TGCTTG 40754 ||||| Sbjct 240 CGCTTG 245 >seq24639 Length=757 Score = 98.7 bits (108), Expect = 3e-16 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 39539 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39598 || ||||| |||||| ||||||||| |||||||| ||||| |||| |||||| ||| Sbjct 34 CTCGGCCATTTCCTCGGCCTTCTTCTTACCCATCGCGCGGCGCAGCAAGTCGGCGCCACC 93 Query 39599 GAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 ||| | ||| ||| | |||| ||||||| | | | ||||||||||||||||| |||| Sbjct 94 GAGCGAGTATCCGCCGATGATCTGCGCATC-TGCATCACCTGCTCCTGGTAGACCATGA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163812530388180