Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_021305.1 Length=76179 Score E Sequences producing significant alignments: (Bits) Value seq12503 158 6e-34 seq12338 87.8 9e-13 >seq12503 Length=1973 Score = 158 bits (174), Expect = 6e-34 Identities = 335/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 65888 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65947 ||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| || Sbjct 1802 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 1743 Query 65948 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66007 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 1742 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 1683 Query 66008 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66067 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 1682 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 1623 Query 66068 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66127 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 1622 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 1563 Query 66128 CATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGAC 66184 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 1562 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 1504 Query 66185 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66244 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 1503 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 1449 Query 66245 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66304 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 1448 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 1389 Query 66305 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66364 | || ||||| ||||| ||| |||||||||| || ||||||||| | ||| Sbjct 1388 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 1329 Query 66365 GAACAAGCTGGCCCCGCC 66382 |||||| || ||| |||| Sbjct 1328 GAACAAACTTGCCTCGCC 1311 >seq12338 Length=2103 Score = 87.8 bits (96), Expect = 9e-13 Identities = 161/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 66305 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66364 ||| | || |||||| | | ||||| ||||| ||| ||||| || ||||||||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 66365 GAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 66424 ||||||| || | |||||| |||| | || ||| | | | ||||| |||| || Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354 Query 66425 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 66482 |||||| || | |||| || |||| |||| ||||| | | | || ||||| | Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412 Query 66483 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAGGGCAAGCCCAAGGC 66535 || ||||||| || ||| | | |||| ||| ||||||||| ||| || Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243537729102900