Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_021305.1
Length=76179
Score E
Sequences producing significant alignments: (Bits) Value
seq12503 158 6e-34
seq12338 87.8 9e-13
>seq12503
Length=1973
Score = 158 bits (174), Expect = 6e-34
Identities = 335/498 (67%), Gaps = 9/498 (2%)
Strand=Plus/Minus
Query 65888 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65947
||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| ||
Sbjct 1802 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 1743
Query 65948 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66007
| | ||| || || ||||||||| | ||||| | || |||||||||| ||
Sbjct 1742 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 1683
Query 66008 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66067
| ||| ||| ||| || | | || | |||| || | ||| |||||| || |||||
Sbjct 1682 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 1623
Query 66068 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66127
|||||| || ||||| || || || || || ||| || | | ||||| ||||| ||
Sbjct 1622 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 1563
Query 66128 CATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGAC 66184
|||| ||||| |||| |||||||| || | | |||| |||| ||| | |
Sbjct 1562 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 1504
Query 66185 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66244
||| | |||||| | ||| ||||| | || | | | || ||| | |||
Sbjct 1503 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 1449
Query 66245 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66304
|| |||| || | ||| || | | |||||| || || | |||| | |||||||
Sbjct 1448 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 1389
Query 66305 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66364
| || ||||| ||||| ||| |||||||||| || ||||||||| | |||
Sbjct 1388 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 1329
Query 66365 GAACAAGCTGGCCCCGCC 66382
|||||| || ||| ||||
Sbjct 1328 GAACAAACTTGCCTCGCC 1311
>seq12338
Length=2103
Score = 87.8 bits (96), Expect = 9e-13
Identities = 161/233 (69%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 66305 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66364
||| | || |||||| | | ||||| ||||| ||| ||||| || |||||||||||
Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294
Query 66365 GAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 66424
||||||| || | |||||| |||| | || ||| | | | ||||| |||| ||
Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354
Query 66425 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 66482
|||||| || | |||| || |||| |||| ||||| | | | || ||||| |
Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412
Query 66483 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCTCAGGGCAAGCCCAAGGC 66535
|| ||||||| || ||| | | |||| ||| ||||||||| ||| ||
Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243537729102900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |