Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8420 125 2e-23 seq2654 96.9 1e-14 seq4089 95.1 4e-14 >seq8420 Length=4928 Score = 125 bits (138), Expect = 2e-23 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| |||||||| | || || ||||| |||||||| ||||| ||||| Sbjct 2769 CGACGCTGAATGTAACCAGTCTCGGCCGTCTTCACAGCCGTATCAATCAGACCTTCACGA 2710 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || ||||| || | |||| ||| | ||| | | || |||| Sbjct 2709 CCACCCATGGCGTGGAAAAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAATTCTCC 2650 Query 302713 ACGAAACCACGCGCCTCGGG--CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| || || | || ||| |||| |||| || ||||| || | Sbjct 2649 ACGAAACCACGACTTTCCGGACCCAA--GTCATCCTTGCCGTAA--TGCGGCAGCGTACG 2594 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 || | | | ||||| |||||||||||||| || ||||||||||| |||| || | ||| Sbjct 2593 GTGGTTAAAACCGTACGGGATACGCTTTCCTTCCACGTTCTGCTGGCCCACACAAGCAAT 2534 Query 302829 CATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 2533 AATCTGCGAGATATT 2519 >seq2654 Length=2984 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || | || |||||| |||||||| || || | ||| || ||||| |||||||| Sbjct 1181 CCGTGCGAGACCAGACAATCGCGCTCCATCTCTCCCATACGCAGGCCACCTTCGCGAGCA 1240 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 1241 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAGCGCGAGTGGATC 1300 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 1301 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 1353 >seq4089 Length=911 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 753 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 694 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | ||| | |||||| | || |||||| || ||||| || || ||||| |||||||| Sbjct 693 AAGCACAAGGATGTGCGGGTTCAGCCACATAGCGGCAGCGAGCACGACCTTCACCTTCTG 634 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 633 ACCACCGGACAG 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471117320684495