Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq10768 185 3e-42 seq24639 87.8 6e-13 >seq10768 Length=4052 Score = 185 bits (204), Expect = 3e-42 Identities = 190/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 40258 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGT 40317 |||||| |||||||| ||||| || || |||||||||||||||||||| | || || Sbjct 1 TGTCGAG-TCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGT 59 Query 40318 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTA-GGCGACCAGCGAACCGGCCGCA 40376 || ||||||||||| ||||| || || || | || |||||| |||||||||||| | Sbjct 60 ACTTGAGCGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCC 119 Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436 || || || ||||| || ||| || ||||| | ||||||||| |||||||||| || Sbjct 120 GAACCACGGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCC 179 Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGC 40496 |||| |||||||| |||||| ||||||| |||||| || || ||||| | | |||| Sbjct 180 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGC 239 Query 40497 TGCTTG 40502 ||||| Sbjct 240 CGCTTG 245 >seq24639 Length=757 Score = 87.8 bits (96), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 39287 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39346 || ||||| |||||| ||||||||| |||||||| ||||| |||| |||||| ||| Sbjct 34 CTCGGCCATTTCCTCGGCCTTCTTCTTACCCATCGCGCGGCGCAGCAAGTCGGCGCCACC 93 Query 39347 CAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGA 39399 || | ||| ||| | |||| ||| ||| | | | ||||||||||||||||| Sbjct 94 GAGCGAGTATCCGCCGATGATCTGCGCATC-TGCATCACCTGCTCCTGGTAGA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163252777335930