Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq12503 136 2e-27 seq12338 104 1e-17 >seq12503 Length=1973 Score = 136 bits (150), Expect = 2e-27 Identities = 384/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 1897 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCACTGAGCTGC 1838 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | || |||||| | | ||| | | |||| ||||||||| ||||| | Sbjct 1837 ATTGCTGAGGCTCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAACACGCC 1778 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 1777 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 1718 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | ||| Sbjct 1717 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGCGGTG 1658 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 1657 GACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 1598 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 1597 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 1538 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 68044 || || || | ||| ||||| || | | |||| ||| | ||| ||||| Sbjct 1537 ACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGCCAGAAG 1478 Query 68045 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 68104 | || | | | || ||| | |||| || | ||||| | |||||||| | | Sbjct 1477 GTGGGGATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGAACAGCTCTGCGTTAC 1421 Query 68105 TACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAG 68161 ||||| || || | |||| | |||| || |||| | ||||| ||||| || Sbjct 1420 TACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAG 1364 Query 68162 GCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 68208 | |||||||||| ||| |||||||| | ||||||||| || || Sbjct 1363 GTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 1317 >seq12338 Length=2103 Score = 104 bits (114), Expect = 1e-17 Identities = 163/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 68137 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAA 68196 ||| | || |||||| | | ||||| ||||| ||| || ||||| ||||| ||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 68197 GAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTC--CATCGTCTACGGCGAGGGC 68254 ||||||| || |||| ||| |||| | || || ||||| ||| ||||||| |||| Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGC-GA-TTTTCGACATTCTCTACGGTCAGGGT 352 Query 68255 ATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGT-TTCCCGAGGGCTCATCAAGAAGTC 68313 || || ||||| | |||| || |||| ||| || | ||| | || || ||||| | Sbjct 353 ATCTCGCGCGAAGGCGAAATCATCGATCTGGGTGTCAACGCGA-AGATCGTCGAGAAGGC 411 Query 68314 TGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAG 68359 || ||||||| || ||| | | |||| ||||||||||||||| Sbjct 412 CGGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAG 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247337608564080