Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022065.1 Length=74533 Score E Sequences producing significant alignments: (Bits) Value seq12503 163 1e-35 seq12338 91.5 7e-14 >seq12503 Length=1973 Score = 163 bits (180), Expect = 1e-35 Identities = 336/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 65191 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65250 ||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| || Sbjct 1802 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 1743 Query 65251 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65310 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 1742 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 1683 Query 65311 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65370 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 1682 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 1623 Query 65371 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 65430 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 1622 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 1563 Query 65431 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 65487 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 1562 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 1504 Query 65488 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 65547 ||| | |||||| | ||| ||||| | || | | | || ||| | |||| Sbjct 1503 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 1449 Query 65548 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 65607 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 1448 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 1389 Query 65608 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 65667 | || ||||| ||||| ||| |||||||||| || ||||||||| | ||| Sbjct 1388 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 1329 Query 65668 GAACAAGCTGGCCCCGCC 65685 |||||| || ||| |||| Sbjct 1328 GAACAAACTTGCCTCGCC 1311 >seq12338 Length=2103 Score = 91.5 bits (100), Expect = 7e-14 Identities = 162/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 65608 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 65667 ||| | || |||||| | | ||||| ||||| ||| ||||| || ||||||||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 65668 GAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 65727 ||||||| || | |||||| |||| | || ||| | | | ||||| |||| || Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354 Query 65728 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 65785 |||||| || | |||| || |||| |||| ||||| | | | || ||||| | Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412 Query 65786 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAGCCCAAGGC 65838 || ||||||| || ||| | | |||| ||| |||||||||| ||| || Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238272912947090