Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq13770 132 3e-26 seq9569 95.1 9e-15 >seq13770 Length=1484 Score = 132 bits (146), Expect = 3e-26 Identities = 143/187 (76%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 95672 GGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGG 95731 |||||||||| ||||| || || || | || || || || || |||||||||||||| Sbjct 1085 GGCACGTTGGCCTTGATCAGACCGGTAATGACGTCGACCGACGGTCGCTGCGTCGCCAGA 1026 Query 95732 ACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGA 95789 | || |||||||| || |||||||||||||| || || ||| | || ||| | |||| Sbjct 1025 ATCAGGTGAATGCCCGCCGCGCGCGCCTTCTGTGCAATCCGGGCGATCAGTT--CTTCGA 968 Query 95790 CTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGT 95849 | |||||| | || ||||||| ||||| ||||| ||||||| ||| |||||||||| Sbjct 967 ---CCTTCTTGCCGACGACCATCATCAGGTCGGCCAGTTCGTCGATCACGACCACGATGT 911 Query 95850 AGGGGAG 95856 | || || Sbjct 910 ACGGCAG 904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 95960 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 96019 || || |||||||| ||| || || |||| || | ||| | | | ||| | |||| Sbjct 713 TCCGTCACCACCGGGCACAACAGATGCTGGATGCCCTCGTACATGCTCATTTCGAGCATC 654 Query 96020 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 96079 ||||| ||||||| ||||||| |||| | || | | || ||| |||| || | Sbjct 653 TTCGGATCGATCAGGATGAGCCGGACCTGCTCGGCCGTCGCCTTGTACAGCAACGACAGA 594 Query 96080 AGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGG 96139 | ||||| |||||| ||||||||||| ||||| | || ||||| |||| ||| Sbjct 593 ATCATCGCGTTGATCCCCACCGACTTGCCCGAACCGGTCGTACCGGCCACAAGCAAGTGA 534 Query 96140 GGCATTTTGGCCAG 96153 ||||| || ||||| Sbjct 533 GGCATCTTCGCCAG 520 >seq9569 Length=6503 Score = 95.1 bits (104), Expect = 9e-15 Identities = 123/166 (74%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743 ||||| || ||||||| || || || || || |||||||||||||| | || || || Sbjct 760 TTGATGAGTCCTGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAGAATCAGGTGGATA 819 Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95803 ||||| || |||||||||||||| | || | || |||||| || |||||| Sbjct 820 CCGGCAGCCCGCGCCTTCTGGGCCAGACGCGCGATCAGCTCCTCGA--TC-TTCTTG--C 874 Query 95804 CCGC--CCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847 |||| |||||||||| || ||||| ||||||| || || ||||| Sbjct 875 CCGCCACCATCATGAGATCGGCCAGTTCGTCGATGACCACGACGAT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351588005262935