Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq35188 226 5e-54 >seq35188 Length=529 Score = 226 bits (250), Expect = 5e-54 Identities = 294/402 (73%), Gaps = 7/402 (2%) Strand=Plus/Minus Query 35444 TTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGAT 35503 |||||| | || ||||| ||| ||||| || ||||||||||||||||| ||||| | Sbjct 442 TTTCGGCAGCGTGACACCACGCTGTCCCTGATACTTACCGCCGCGATCCTTATACGACGT 383 Query 35504 TTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACAC 35563 || ||| | ||||| ||||| ||||||| ||| ||||| |||||||| ||||| | Sbjct 382 CTCACAGACTTCGTCGGATTCGAAGAACAGCACCTGAGCCACGCCTTCGTTGGCGTAGAT 323 Query 35564 ACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGG 35623 |||||||| || ||||| ||| ||||| ||||| | ||| |||| || || Sbjct 322 CTTGGCCGGCAGCGGCGTCGTGTTCGAGAATTCCAGGGTCACGTAGCCT-CCCATTCGGG 264 Query 35624 TTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACA 35683 ||| | |||||| ||||| |||||||| || ||||| || || || ||| |||| ||| Sbjct 263 TTCGAACGGCGTTACGTTCACGATGATGCCGCAGCGGGCATACGTCGACTTGCCCAGACA 204 Query 35684 CACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCT 35743 ||| || ||| ||||||| ||||||||||| ||||| ||||| || || ||||| Sbjct 203 CACGGTCAGTACGCTGCGCGGGATGCGGAAGTACTCGACGGTGCGCGCGAGCGCGAACGA 144 Query 35744 GTTCGGCGGAATCAGGATGCTGTCA--GCCTTAACCGGCTGC-AGGCACTTGGGATCGAA 35800 |||||||||||| ||||| | || || | || | | | | |||| ||||| Sbjct 143 GTTCGGCGGAAT---GATGCAGACATCGCTCTCGACGTCGACAAAGGACTTCTCGTCGAA 87 Query 35801 GTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGAC 35842 |||||||||||| || | | ||||||||| |||||||| Sbjct 86 GTTCTTCGGATCGACGATCGTCGAGTTGATGTTCGTGAAGAC 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825533419745400