Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2604 210 3e-48 seq6339 197 2e-44 seq2372 183 5e-40 seq11821 136 6e-26 seq10228 100 5e-15 seq2678 95.1 2e-13 >seq2604 Length=2437 Score = 210 bits (232), Expect = 3e-48 Identities = 243/327 (74%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||||| ||||| |||| ||||| |||||||||||||||||| Sbjct 1922 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTC 1981 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||||| ||||||||| ||||||||||| || || || || Sbjct 1982 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAAC 2041 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | || ||||| | | | || | | || | |||||| | |||||| Sbjct 2042 GCCAGCAGACGCTCCGGGTACGACGACACTCGCGG---GTCGCACCACTTGAGCGCCCAG 2098 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || ||| |||| | || | ||| |||||||| || | |||||||||||||| Sbjct 2099 TGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCC 2158 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || ||||||| ||| ||||| ||||| ||||| || ||||||||||||||| ||| Sbjct 2159 GTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCG 2218 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||||||| || || |||||| Sbjct 2219 ATGGCGATCTGGAAACCGTAGAAGCAG 2245 Score = 176 bits (194), Expect = 7e-38 Identities = 234/318 (74%), Gaps = 14/318 (4%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||| | ||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1601 ACACCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGC 1660 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGC--CGTCAGGTAGTGCTTCT-CGCACCCG 794009 ||||||| |||||||| ||||||||| ||| |||| |||| | ||||| Sbjct 1661 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTT--GTAGATCTTCGACACACCC- 1717 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||| |||||||| ||||| || ||||||||||||||||| | | |||| Sbjct 1718 AGCGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTC 1777 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| || | || ||||| | ||||||| || || Sbjct 1778 ATGCCGATCAGCTCCACAGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCG 1837 Query 794130 TCGATGATGATCTGCCTGGGCACGTCGG----ACGACGGCTTGTCGACGAGCATCGTGTA 794185 ||| | ||||| | ||||| ||| || | |||||| || ||| | | ||| Sbjct 1838 TCGCGCACGATCT---CGTGCACG-CGGCTCTCCGGCAGCTTGTTCACCAGCTTGGAGTA 1893 Query 794186 GAGCAGGCAGGCAAAGTC 794203 | ||||| || ||||| Sbjct 1894 CATGAGGCACGCGAAGTC 1911 Score = 120 bits (132), Expect = 5e-21 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| || || || || || || ||||| |||||||||||| | Sbjct 2240 AAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTC 2299 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||||||||||||||| ||||| ||||| || ||||||||||| ||| ||||||| | Sbjct 2300 ACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTG 2359 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 || | || |||||| | |||| || || ||||| | ||||||||| ||||| Sbjct 2360 TCCGTCAGGTTCGCCCAGTCCTTCAGGTCGTGCACC-AGGTCCAGCTCCTCGGCCGTCCA 2418 Query 796320 AAAGGAGGCCTCGGCCTT 796337 || |||||||| ||||| Sbjct 2419 GAACGAGGCCTCCGCCTT 2436 >seq6339 Length=679 Score = 197 bits (218), Expect = 2e-44 Identities = 341/489 (70%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 118582 CGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACA 118641 |||| || | | || |||||| ||| | | ||| |||| | | ||||||||||| || Sbjct 185 CGCCGAGCACGCTGCTCGTGACGGTGCTGGCGCCGCTCTT-CTCGCGCCGCGCATGACCA 243 Query 118642 CGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTG 118700 ||||||||| | |||| | || ||| | ||||| | | || | |||| | || Sbjct 244 TGCACATGTGCGTGGCCTCAATGACCACGGCCACGCC-CTTGGGCTCAATGACGCCCATG 302 Query 118701 ATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATG 118760 ||| | ||||||||| ||||| |||||||||||| | |||| ||||| | Sbjct 303 ATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAGGCGGCGCGAGAAGACC 362 Query 118761 TCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACG 118820 ||| || ||||| || |||||| || |||| | | |||| || | |||||| | | Sbjct 363 TCGCTGACGCGCGCGAGCTTGCTGAGCCCGAGCACCTTGCCGTTCGGGATGTAGCCGATG 422 Query 118821 TGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCG 118880 ||| ||||||| | || |||| || |||||||||||||||||| | | ||| |||||| Sbjct 423 TGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATGGAGTACAGGTCGATGTCG 482 Query 118881 CGCACGGTCACCATCTCGCCCGACGT-CTCGGCAAAGAGGGCGTCGCCGACGGCCTCGGC 118939 |||||| | ||||||||| || || ||| | || | ||| ||| | | ||||| Sbjct 483 CGCACGATGACCATCTCG-TCGTGGTCCTCCTCGAACACGGCCTCGTTCAGCACGTCGGC 541 Query 118940 CAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGT 118999 |||| || ||| || ||| ||| | || || |||||||||| |||||||||||| Sbjct 542 CAGGCTCTGGCCGTAGCCCTTGGTGTTGTACAGCAGCGCCTTGGCCATGCGCATGGGCGT 601 Query 119000 GTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAGACAGACCAGCATGGTCCTCGTGGC 119059 | || || ||||| ||||| ||||||||| | || | |||| ||| || ||| Sbjct 602 CTTCACCAGCCCCTCACGCGCAGGGTCCTCGCCGATGCACTCGAGCAGCGTCGTCACGGC 661 Query 119060 GTCGGCCAT 119068 | ||||| Sbjct 662 CGCCGCCAT 670 >seq2372 Length=2131 Score = 183 bits (202), Expect = 5e-40 Identities = 196/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || ||||| || ||||||||| |||| || || || | | Sbjct 2 TGAACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCGAGCTCACCCGGGA 61 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || |||||||||||||||||||||||| || || ||| |||||| | Sbjct 62 GCATGAGACGCACGGCGGTCTGGATCTCGCGGCTGGAGAGCGTCGACTTCTTGTTGTAAC 121 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | | ||||||| |||| |||||||||| |||||||||| Sbjct 122 GCGACAGCTTGCCGGCCTCCGAGGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 181 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||||||| ||||||||||||||| |||||||||| Sbjct 182 TGATCGACATGCCGCGCTTGCTGATGCCCGTGTCGGGGTGCACCTGACGCAGCACCTTGT 241 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| ||||||||| Sbjct 242 AGATGTAGGTCGAGTACGA 260 >seq11821 Length=1105 Score = 136 bits (150), Expect = 6e-26 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || ||||| ||||||||||| || || |||||||| | | ||| || Sbjct 14 GCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATT 73 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 |||| |||||| ||||| | |||| | | ||| || | |||||| | Sbjct 74 GGACGAGCCGTTCGTGCCTCGAATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGAT 133 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || |||||| || ||||| || || | || | ||| ||||| ||||| Sbjct 134 GCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAATGCC 193 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || |||||| | | |||| |||| || ||||| ||||| ||| ||||||| ||| Sbjct 194 TTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGT 253 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 |||||| || || || || || || || |||| | || ||| |||||| |||||| Sbjct 254 GCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATGAGCTCGTA 313 Query 2073837 GGT 2073839 || Sbjct 314 CGT 316 >seq10228 Length=2609 Score = 100 bits (110), Expect = 5e-15 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1703804 GCCATGGATGGCGCCGCCGCTTACGACCACCTCGACGTCGTCAAGTGGCTCCACGAGAAT 1703863 ||||||||||||||||| || ||| ||||||||| || ||||||||||| ||| | ||| Sbjct 466 GCCATGGATGGCGCCGCGACTAACGGCCACCTCGAAGTTGTCAAGTGGCTGCACAATAAT 525 Query 1703864 CGCACCGAGGGATGCGCGACTGCCGCCATGGATAGCGC 1703901 ||| | || || ||| | |||||||| |||||| |||| Sbjct 526 CGCTCTGAAGGCTGCACCACTGCCGCTATGGATGGCGC 563 >seq2678 Length=2489 Score = 95.1 bits (104), Expect = 2e-13 Identities = 164/232 (71%), Gaps = 16/232 (7%) Strand=Plus/Minus Query 1249580 TATCTGCACGCGCTCGACCCGCCCGTCGTCCACCGCGATCTCAAGAGCAGCAAC---CTG 1249636 || |||||| ||||||||||||| || | |||||||| |||||| || ||| ||| Sbjct 412 TACCTGCACTCGCTCGACCCGCCGGTGCTGCACCGCGACCTCAAGTCCAAGAACATCCTG 353 Query 1249637 CTGGTCGACGACGAGTACAATGTCAAGGTGGCCGACTTTGG--TCTCGCGCGCATCCGCG 1249694 ||| | |||| | | | |||| | | |||||||| |||| || | | |||| Sbjct 352 CTGACCTCCGACCTGGAA---GCCAAGCTCACGGACTTTGGCATCTCTCGAGAA--CGCG 298 Query 1249695 AGGACAATGCCACCATGACGC--GGTG-CGGCACGCCGGCGTGGACGGCGCCCGAGGTCA 1249751 ||||| ||||||||| || | ||||||| || |||| ||| |||||||||| Sbjct 297 TCGACAAG---ACCATGACGGCTGGCGTCGGCACGTCGCTCTGGATGGCTCCCGAGGTCA 241 Query 1249752 TCCGCGGCGAGCGCTACGACGAGCGCGCCGACGTCTACTCGATCGGCATCGT 1249803 | |||||| | |||||||| |||||| ||| |||| ||||| |||| Sbjct 240 TGATGGGCGAGAGGTACGACGACAAGGCCGACATCTTCTCGTTCGGCGTCGT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912296180677265