Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2070 127 1e-24 seq9309 105 4e-18 >seq2070 Length=5564 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 ||||| || | || || ||| |||||||| | || ||||||||| ||||| ||||| Sbjct 1061 TTTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 1120 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || |||| | || ||||| ||||| ||||||||||| || || |||||||| || Sbjct 1121 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGC 1180 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||||||||| | || || || || ||| | ||||| || | ||| Sbjct 1181 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 1240 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || |||||||| ||||| || ||||| || || |||||||| Sbjct 1241 ACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 1290 >seq9309 Length=2487 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 1164 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1105 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 1104 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325545397036565