Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_022976.1
Length=75894
Score E
Sequences producing significant alignments: (Bits) Value
seq12503 167 1e-36
seq12338 87.8 9e-13
>seq12503
Length=1973
Score = 167 bits (184), Expect = 1e-36
Identities = 337/498 (68%), Gaps = 9/498 (2%)
Strand=Plus/Minus
Query 66240 CGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGA 66299
||||| ||||||||| || ||| || | ||| || | ||||||||||| || ||||| ||
Sbjct 1802 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 1743
Query 66300 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66359
| | ||| || || ||||||||| | ||||| | || |||||||||| ||
Sbjct 1742 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 1683
Query 66360 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66419
| ||| ||| ||| || | | || | |||| || | ||| |||||| || |||||
Sbjct 1682 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 1623
Query 66420 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66479
|||||| || ||||| || || || || || ||| || | | ||||| ||||| ||
Sbjct 1622 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 1563
Query 66480 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66536
|||| ||||| |||| |||||||| || | | |||| |||| ||| | |
Sbjct 1562 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 1504
Query 66537 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 66596
||| | |||||| | ||| ||||| | || | | | || ||| | ||||
Sbjct 1503 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGT 1449
Query 66597 CACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66656
|| |||| |||| ||| || | | |||||| || || | |||| | |||||||
Sbjct 1448 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 1389
Query 66657 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAA 66716
| || ||||| ||||| ||| |||||||||| || |||||| || | |||
Sbjct 1388 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 1329
Query 66717 GAACAAGCTGGCCCCGCC 66734
|||||| || ||| ||||
Sbjct 1328 GAACAAACTTGCCTCGCC 1311
>seq12338
Length=2103
Score = 87.8 bits (96), Expect = 9e-13
Identities = 161/233 (69%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 66657 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAA 66716
||| | || |||||| | | ||||| ||||| ||| ||||| || || ||||||||
Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294
Query 66717 GAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 66776
||||||| || | |||||| |||| | || ||| | | | ||||| |||| ||
Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354
Query 66777 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 66834
|||||| || | |||| || |||| |||| ||||| | | | || ||||| |
Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412
Query 66835 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAGCCCAAGGC 66887
|| ||||||| || ||| | | |||| ||| |||||||||| ||| ||
Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242626141858425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |