Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2070 96.9 3e-15 >seq2070 Length=5564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | || ||||| ||||| || |||| |||| | Sbjct 1291 AATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 1232 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || | ||| | | || || || |||||| || || || ||| | || || || Sbjct 1231 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 1172 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||||||||||| | || || |||||||| Sbjct 1171 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 1112 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 ||| || |||||||| ||| ||||| ||||| || | |||| || ||||| Sbjct 1111 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGTGGAAA 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398696275216015