Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq7137 82.4 2e-11 >seq7137 Length=12292 Score = 82.4 bits (90), Expect = 2e-11 Identities = 226/344 (66%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 6144 AAAGGGCGTATTATCCGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGC 6203 || ||||| || ||||| || ||| ||||||||||| | ||| || | ||| ||| Sbjct 8510 AAGGGGCGCATCATCCGCGTGCCATCGAACTATGACCCCGCCACGCGTGCGTATGTCGGA 8569 Query 6204 AATTGGGATGGGTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGAC 6263 ||||| || | || || ||| | || |||||||||| ||||| | || ||| Sbjct 8570 TCGTGGGACGGTACTTTCAAGACGGCATGGACTGACAATCCGGCATGGGTGTTTTATGAC 8629 Query 6264 GTATTGACTCAACCGCGGTTCGGGCTTGGTAAGCGCGT-TACGGCGGCCATGCTAGATAA 6322 | || || || || | || || || | || || | |||| || | | || || Sbjct 8630 TTGGTGTTGCATCCTCGCTATGGACTCGGCCATCGGGTGAATGGCGCACA-GGTCGACAA 8688 Query 6323 ATGGGAGTTGTACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATGGTGCCGGTGG 6382 ||| |||||| ||||||||| ||||| | |||| ||||| | ||| || Sbjct 8689 GTGGTCCCTGTACCAGATCGCACAGTATTGCGACGAACTGGTCGACGATGGCGACGGAGG 8748 Query 6383 TGTTGAGCCGCGTTTCGAGTTCAACTGTTATTTGCAGGCGCAGGCCGATGCCTGGACGGT 6442 || ||||| ||| | ||| || |||||||||| || ||| || |||| | ||| Sbjct 8749 CCAAGAACCGCGCTTCACCTGCAATTGCTATTTGCAGGAGCGGGCTGACGCCTACAAGGT 8808 Query 6443 GATCCGTGATATCGCGGCGGGATTTAACGGGCTGACGTATTGGG 6486 | | | ||| ||||| | | ||| ||| || ||||||||| Sbjct 8809 GCTGCAGGATCTCGCGACAGTCTTTCGCGGAATGGCGTATTGGG 8852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137472151043730