Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq13770 136 3e-27 >seq13770 Length=1484 Score = 136 bits (150), Expect = 3e-27 Identities = 242/347 (70%), Gaps = 17/347 (5%) Strand=Plus/Minus Query 94433 CATCGGAGACGAACGCGCCCTGTATCCGGAT-GGCGCTGCGCGCCCCCACCGGCAGGAAT 94491 |||||| |||||||| || || | || | ||| | || | ||| ||||| | | Sbjct 1240 CATCGGCCACGAACGCACCGTGCACACGCAACGGCAATCCG-GTGCCCGGCGGCATGTAC 1182 Query 94492 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 94551 | | ||| ||||| |||| ||| |||||| || || |||||| ||| || | Sbjct 1181 AGCATGTCGCCCATGCCCAGCAGCGTCTCGGCGCCCTGCTGGTCCAGAATCGTGCGCGAA 1122 Query 94552 TCGGTGAGGGACG----CTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAG 94607 ||| | |||| ||| ||||| || ||||| |||||||||| |||||| || Sbjct 1121 TCGATCTTCGACGACACCTG----GAACGCCACCCGCGTGGGCACGTTGGCCTTGATCAG 1066 Query 94608 GCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGC 94667 || || | || || || || || |||||||||||||| | || |||||||| ||||| Sbjct 1065 ACCGGTAATGACGTCGACCGACGGTCGCTGCGTCGCCAGAATCAGGTGAATGCCCGCCGC 1006 Query 94668 ACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCC 94725 ||||||||||| || || ||| | || ||| | || ||| |||||| | | || Sbjct 1005 GCGCGCCTTCTGTGCAATCCGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGACC 951 Query 94726 ATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 94772 ||||| ||||| || ||||| || | ||| ||||||||||| || || Sbjct 950 ATCATCAGGTCGGCCAGTTCGTCGATCACGACCACGATGTACGGCAG 904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339967666809680