Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq10133 89.7 5e-13 >seq10133 Length=5210 Score = 89.7 bits (98), Expect = 5e-13 Identities = 193/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG 111973 || || ||||| ||||| ||||| || ||| || |||||| || | || || ||||| Sbjct 1500 GCCATGGCATTGATGGTGAAGTCGCGCCGGATCAGATCCTCCTCCAGCGTGACTTCTGGT 1559 Query 111974 CTGAACATCACCTCGAAATCGTGGTATCCT-GCGCCAGTTGAACGCTCGGTACGGGCCAG 112032 ||| | | ||| | ||||| || ||||| || ||||||||||| ||||| Sbjct 1560 GCGAAGTAGAACGAGAAGCCATGGTAGCCACGCGCC-GTCTTGCGCTCGGTACGCGCCAG 1618 Query 112033 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTC 112092 || ||||| | | |||| |||||||| | || ||||| || || || | Sbjct 1619 CGCATACTCGGCTTGTGTCTTGGGATGCAGAAACACCGGGAAGTCGCGCCCCACCGGACG 1678 Query 112093 GAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTT 112152 |||||| || || ||||||||| | || | |||||||| || ||||| ||||||| Sbjct 1679 GAAGCCCTGTCGCACCATCTCTTCCGGCGTCGCACCGACCACGACATAGTCGCGGTCTT- 1737 Query 112153 GCTCTCA---ACACCCATCAGTTCATCGCGGACCGCGCCGCCGAC 112194 || || | |||| || | ||||| | ||| |||||||| Sbjct 1738 --TCACAGGCAGTCCCAGCATGGCGTCGCGAATCGCACCGCCGAC 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476968894181200