Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2604 179 4e-40 seq22877 168 6e-37 seq2070 161 1e-34 seq11821 111 2e-19 >seq2604 Length=2437 Score = 179 bits (198), Expect = 4e-40 Identities = 514/772 (67%), Gaps = 29/772 (4%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| |||||||| || ||||||| || ||| || ||| ||| Sbjct 1615 GTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 1674 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAAC-TGTACGAGCAGTC 120472 | ||||||||||| | |||| || |||| | |||| | |||| ||||| | Sbjct 1675 CCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGAC 1733 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 |||| || || ||||| ||||||| ||||||| | || ||||||||| | || | ||| Sbjct 1734 GGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCA 1793 Query 120533 CCGGCAACG-CCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCG 120591 | || | || ||| | ||||| | ||| || |||||| || | || || Sbjct 1794 CAGGGAGCGAGTCACG-CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCG 1852 Query 120592 AGCATAGTGTGGC---CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTAC---AGGCAC 120645 ||| | ||| | |||| || ||||| | || | | ||||| |||||| Sbjct 1853 TGCA---CGCGGCTCTCCGGCAGCT--TGTTC-ACCAGCTT---GGAGTACATGAGGCAC 1903 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||||||||||| ||||||||| || ||||||||||| || ||||||| Sbjct 1904 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 1963 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||||| ||| | |||||| |||| |||| | || |||||| ||||| | | Sbjct 1964 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATG 2023 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGC-TGTCGAT 120824 |||||||| || || || | || ||||| | ||| || | || || |||| Sbjct 2024 CCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGAC-ACTCGCGGGTCGCA 2082 Query 120825 CCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884 |||||| | ||||| | || || || ||| ||||| ||| |||| || ||| Sbjct 2083 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 2142 Query 120885 CAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTC 120944 ||| ||| ||| | | ||| || | | |||||||| |||| || Sbjct 2143 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTC 2202 Query 120945 CGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCTCCAGCTC 121001 | ||| | | |||||| || | |||| ||| ||| | | |||||| || | Sbjct 2203 TGAGTGGATGTTCTCGAT-GGCGAT--CTGGAAACCGTAGAAGCAGCGGGCCTCCGGCAC 2259 Query 121002 GGGCACCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGG 121060 |||| | |||| | || | | ||||| |||||||| | |||| ||| | Sbjct 2260 CTGCACTTCATTGCTG-AAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAG 2318 Query 121061 CGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTT 121112 ||||||| ||||||||||||||||| ||| ||||||| |||||| || || Sbjct 2319 CGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTT 2370 >seq22877 Length=809 Score = 168 bits (186), Expect = 6e-37 Identities = 520/791 (66%), Gaps = 39/791 (5%) Strand=Plus/Plus Query 148428 GCCCAGTCCCAGAG---CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||| ||| | || |||||| || ||| |||||||||| |||| | ||||| Sbjct 11 GCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCC 70 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||||||||| ||||| | ||| |||||| ||| | || || | || || Sbjct 71 TTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGATCTC-CAT 129 Query 148545 CT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC 148603 | || ||| | ||| || |||| || |||||| || | | |||||||| | || Sbjct 130 CGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGC 189 Query 148604 CGACTCGCTTTCGTACGGCATACG-CAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGC 148662 | |||||| ||| ||| | || || | | ||||||||| || |||||||| |||| Sbjct 190 CTTCTCGCTCTCGAACG-CGTAGTTCATGAGGATAAACGCGTCCGCGAGGCCCTGGACGC 248 Query 148663 CCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC---GGATAGT 148719 | | || ||||| ||||| |||||||| |||||| ||||| | || |||| Sbjct 249 CAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGATCACGGGGTAGT 305 Query 148720 GGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCA 148779 |||| |||||||| ||||| | ||||| |||||||| || | || | | | Sbjct 306 AGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCA--CTTCATACAA 363 Query 148780 ATTCAAAATCGTACTTG---------TCATCTACGATGCATCGGTTCACGGCGATAGAGG 148830 ||| | ||| ||| || || |||| | | || || || | ||| | Sbjct 364 CTTC----TGGTAGTTGAAAACTCCTTCCTCCACGAA-CTTAGG--CAGCGCCACAGACG 416 Query 148831 CTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGAT 148890 | | |||||||| ||| ||| ||||| | ||||||| | | ||| ||| | | Sbjct 417 CCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAGT 476 Query 148891 TGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGT 148950 ||||| | |||| ||| | ||||| || || ||||| |||| ||||||||||| Sbjct 477 TGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGT 536 Query 148951 ACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGT 149007 ||| ||| | || | || || || | ||| | |||| ||| ||||| ||| | Sbjct 537 ACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAATATGGCGAACC---ACAGCT 593 Query 149008 CCTGCGCG-CGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGC 149066 ||| ||| | | | ||| | ||| |||||| |||||| ||| || | Sbjct 594 GCTGGGCGTTGATCGTCTTGC-GGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCC 652 Query 149067 TCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGAC 149126 ||||| | ||||| |||| || | ||| || ||| || || ||||| | ||| | Sbjct 653 TCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAAAAGAGACTC 712 Query 149127 CACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATG 149186 ||| ||| | || | ||| | |||||| |||||||| |||||||| || ||||| | Sbjct 713 CACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAAC 772 Query 149187 AGGTCGCGCGC 149197 |||||||| || Sbjct 773 AGGTCGCGAGC 783 >seq2070 Length=5564 Score = 161 bits (178), Expect = 1e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| |||| || |||| |||||| ||||||||||| Sbjct 1094 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 1153 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 1154 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 1213 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || ||| | ||||||||||||| |||| ||| ||||| ||||| || Sbjct 1214 ACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTC 1273 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1274 TTGACGAAAATCTGCAT 1290 >seq11821 Length=1105 Score = 111 bits (122), Expect = 2e-19 Identities = 315/482 (65%), Gaps = 9/482 (2%) Strand=Plus/Plus Query 149292 CGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 |||||||| ||||||||| |||| ||| | ||| ||||||||| || | ||| || Sbjct 3 CGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGG 62 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG 149408 |||||| ||| | |||||| || | |||| ||| | ||||| | ||| Sbjct 63 ATGATGCCATTGGACGAGCCGTTCGTGCCTCGAATGTAGCTGTTGGTGGCTCGGATGTTG 122 Query 149409 TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTC 149468 |||| ||| ||| || || ||| | | || ||||| || || | | ||| Sbjct 123 TGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTG 182 Query 149469 GAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGC 149528 ||| ||||| || || |||| | ||||| || || ||||| || ||| ||| Sbjct 183 TCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGT 242 Query 149529 GGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTC 149588 || |||||||||| || | || ||| |||| || || ||| | | || | Sbjct 243 GGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGAC 302 Query 149589 ATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACG 149648 || | |||||||| ||| || || | |||| |||||||| | || ||| Sbjct 303 ATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACG 362 Query 149649 CGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA---GTAG 149705 ||||| | ||| |||||||| |||||| |||||||| || || | | || ||| Sbjct 363 CGCATAATCATTTGCTGCGGACGCTCCACCACTTTG---CCGTTTACGCGGAAGAGGTAC 419 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 ||| || || || || | |||||||| | ||| |||||||| ||| ||||| ||| Sbjct 420 CCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATCAAAGTCCCGGTCGTGGATGATG 479 Query 149766 GC 149767 || Sbjct 480 GC 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483196402107400