Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq4411 98.7 1e-15 seq25497 89.7 5e-13 seq22515 82.4 8e-11 >seq4411 Length=21687 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| |||||||||| ||| | ||| |||| || || || || ||||||| || Sbjct 3868 TTCGGCTATCAGATGCGCTTCGACCTGCAGGAAGGGTTCCCGCTCGTCACCACGAAAAAA 3809 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| | || |||||| | |||||| ||||||||||| ||||| || ||| | Sbjct 3808 GTGCACATCAAATCGATCGTGCACGAACTGCTGTGGTTCCTGCAAGGCAGCACCAACGTG 3749 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||| | || || || |||| |||||| | |||||||| |||||| | || | Sbjct 3748 CGCTATTTGCAGGAAAACGGCGTCTCCATCTGGAACGAATGGGCGGATGCCGAAGGTGAA 3689 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449 ||||| || ||||||||| ||| ||| Sbjct 3688 CTCGGGCCCGTCTACGGCGCGCAATGG 3662 >seq25497 Length=733 Score = 89.7 bits (98), Expect = 5e-13 Identities = 194/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 142547 ATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGAC-ATGGCACTT 142605 |||| || || | ||||| |||| |||||| | ||| | | ||| ||||| || Sbjct 617 ATTCGCGCCGCCTTATCGTTTCCGCATGGAACGTGGGCGAACT-GCCGAAGATGGCCCTG 559 Query 142606 CCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAA--GAAGCGTCTGTCATGCC 142663 ||||| |||| |||||||| ||| |||| | |||| ||| ||| | |||| Sbjct 558 ATGCCGTGCCACACCATGTTCCAGTTCTACGTGG---CGAACGGAAAACTCT--CGTGCC 504 Query 142664 AGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACG 142723 ||||||| ||||| |||| || ||||||||| | |||||||| || || |||| Sbjct 503 AGCTGTACCAGCGCTCGGGCGATATTTTCCTCGGCATCCCGTTCAATATCGCCAGCTACG 444 Query 142724 CGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTCCACA 142783 | || ||||| || | || || | | ||| |||||| | || || ||||| || | Sbjct 443 CACTGCTCACCCATATGATCGCCCAGGTCACCGGGCTGGAAGTGGGCGAATTCGTGCATA 384 Query 142784 CCTTCGGCAATTCGCACATCTA--CGATACACA-CGAAGAAGC 142823 || | ||| || ||||| | || ||| |||| |||| |||| Sbjct 383 CCCTGGGCGATGCGCACCTGTATTCGAACCACATCGAACAAGC 341 >seq22515 Length=820 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 142570 GCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAA 142629 |||||||| || || || || | || ||||| || || ||||| |||||| | | ||| Sbjct 206 GCGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAG 265 Query 142630 TTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGG 142689 ||| |||| | | || | | || |||| |||||| |||| ||||| ||||| ||| | Sbjct 266 TTCTACGTGGCC--GACGGCGAGT-TGTCCTGCCAGATGTACCAGCGCTCGGCCGACATG 322 Query 142690 TTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCAC 142733 || ||||| ||||||||||| || |||||| | || || Sbjct 323 GGACTTGGCGTGCCGTTCAACATCGCCAGCTACGCGTTGCTTAC 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500266874527600