Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq22515 226 3e-54 seq25497 178 2e-39 seq4411 96.9 4e-15 >seq22515 Length=820 Score = 226 bits (250), Expect = 3e-54 Identities = 305/414 (74%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| || ||||| || || ||||| || || || | ||| ||||| || || Sbjct 459 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 400 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || | || || | || |||| || ||||||||| ||||| Sbjct 399 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 341 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || | ||| || Sbjct 340 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 281 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| |||||||| | || || Sbjct 280 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 221 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || || | | || | Sbjct 220 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 162 Query 147218 CGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCAC 147275 | |||||| || | ||||||||||||||||| || |||| | | | ||| |||| Sbjct 161 CAATAACCTCAGC-GAGCTGGTCCACGCCCTGACCAGTGTAG-TCGGCGTGCATGTCCGT 104 Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329 |||| | || ||||| || | ||||||||||||||| || || || |||||||| Sbjct 103 GTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 50 >seq25497 Length=733 Score = 178 bits (196), Expect = 2e-39 Identities = 223/306 (73%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 146946 GTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCAC 147005 |||||| || |||||||| ||||| || || ||| | || ||||| || ||||| | Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426 Query 147006 CATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCC 147065 ||| | ||||||||| | ||||||||| || ||||| |||| || ||| || || || Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486 Query 147066 CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGAT 147125 ||| | ||||||||||||||||||||| | |||| |||||||| |||||| ||| | | Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAACTGGAACATGGT 546 Query 147126 GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAG 147185 |||||||||| ||| ||||| ||||| || | |||||| || || || | || Sbjct 547 GTGGCACGGCATCAGGGCCATCTTCGGCAGTTCGCCCACGTTCCATGCGGAAACGATAAG 606 Query 147186 CCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCC 147245 || | || ||||| | ||| |||||||| | ||||| | ||||||||| | Sbjct 607 GCGGCGCGAATCCGGGTTGCGCTTGATCTCTTCCACCACCCAGGCGATCTGGTCCACCAC 666 Query 147246 CTGGCC 147251 || ||| Sbjct 667 CTTGCC 672 >seq4411 Length=21687 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 |||||||| || |||||||| | || | || | ||||||||| |||||||| || Sbjct 3375 AGGCCGGTTTGCTGCGCCACCATATGCGTCAACAATGCGTAGCTGGCGATGTTGAACGGC 3434 Query 147046 ACCCCCAGGCCCATGTCCCC-CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC 147104 ||||| ||| |||||| | | || | || || |||||||| || | || |||||||| Sbjct 3435 ACCCCGAGGAAGATGTCCGCACTACGT-TGATAAAGCTGGCAGGACAACTTGCCGTCGGC 3493 Query 147105 CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||| | | |||||||| ||||||||||| Sbjct 3494 AACGTAGAACTGGAAGAACGCATGGCACGGGGGCAGCGCCAT 3535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583217152164000