Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq22515 226 3e-54
seq25497 178 2e-39
seq4411 96.9 4e-15
>seq22515
Length=820
Score = 226 bits (250), Expect = 3e-54
Identities = 305/414 (74%), Gaps = 8/414 (2%)
Strand=Plus/Minus
Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979
|| ||||| || ||||| || || ||||| || || || | ||| ||||| || ||
Sbjct 459 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 400
Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038
||||| || || |||| || || | || || | || |||| || ||||||||| |||||
Sbjct 399 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 341
Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098
||| || || || || |||||||| |||| | |||||||| |||||| || | ||| ||
Sbjct 340 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 281
Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158
|||||||||||| |||||||| | |||||||||||||| |||||||| | || ||
Sbjct 280 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 221
Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217
||| || ||||| ||||| | ||| | ||| | | | || || || | | || |
Sbjct 220 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 162
Query 147218 CGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCAC 147275
| |||||| || | ||||||||||||||||| || |||| | | | ||| ||||
Sbjct 161 CAATAACCTCAGC-GAGCTGGTCCACGCCCTGACCAGTGTAG-TCGGCGTGCATGTCCGT 104
Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC 147329
|||| | || ||||| || | ||||||||||||||| || || || ||||||||
Sbjct 103 GTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 50
>seq25497
Length=733
Score = 178 bits (196), Expect = 2e-39
Identities = 223/306 (73%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 146946 GTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCAC 147005
|||||| || |||||||| ||||| || || ||| | || ||||| || ||||| |
Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426
Query 147006 CATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCC 147065
||| | ||||||||| | ||||||||| || ||||| |||| || ||| || || ||
Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486
Query 147066 CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGAT 147125
||| | ||||||||||||||||||||| | |||| |||||||| |||||| ||| | |
Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAACTGGAACATGGT 546
Query 147126 GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAG 147185
|||||||||| ||| ||||| ||||| || | |||||| || || || | ||
Sbjct 547 GTGGCACGGCATCAGGGCCATCTTCGGCAGTTCGCCCACGTTCCATGCGGAAACGATAAG 606
Query 147186 CCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCC 147245
|| | || ||||| | ||| |||||||| | ||||| | ||||||||| |
Sbjct 607 GCGGCGCGAATCCGGGTTGCGCTTGATCTCTTCCACCACCCAGGCGATCTGGTCCACCAC 666
Query 147246 CTGGCC 147251
|| |||
Sbjct 667 CTTGCC 672
>seq4411
Length=21687
Score = 96.9 bits (106), Expect = 4e-15
Identities = 120/162 (74%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045
|||||||| || |||||||| | || | || | ||||||||| |||||||| ||
Sbjct 3375 AGGCCGGTTTGCTGCGCCACCATATGCGTCAACAATGCGTAGCTGGCGATGTTGAACGGC 3434
Query 147046 ACCCCCAGGCCCATGTCCCC-CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC 147104
||||| ||| |||||| | | || | || || |||||||| || | || ||||||||
Sbjct 3435 ACCCCGAGGAAGATGTCCGCACTACGT-TGATAAAGCTGGCAGGACAACTTGCCGTCGGC 3493
Query 147105 CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||| |||||| | | |||||||| |||||||||||
Sbjct 3494 AACGTAGAACTGGAAGAACGCATGGCACGGGGGCAGCGCCAT 3535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583217152164000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |