Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2604 307 2e-77 seq6339 161 1e-33 seq2372 154 2e-31 seq11821 149 9e-30 >seq2604 Length=2437 Score = 307 bits (340), Expect = 2e-77 Identities = 385/518 (74%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 1455795 AAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC-CGACACGGTCCA 1455853 ||||| |||||||| || ||||| ||||||||| | ||||| || || |||| | | Sbjct 2436 AAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCT-GGTGCACGACCTGAAGGA 2378 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| | |||| ||| ||||||| |||||||||||||| || ||||| || || Sbjct 2377 CTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTT-CG 2319 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | |||||||| ||||||||| ||||||||||||| ||| | || || || || Sbjct 2318 CTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGG 2259 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 |||| ||||| || | || ||||| ||||||||||||||||| ||||||||||| || Sbjct 2258 TGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGG 2199 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 || ||||| || || ||||| ||| ||||||| || |||||||||||||| | | Sbjct 2198 TGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGC 2139 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 | |||||||| ||| | |||| |||| ||| || || |||||||| | |||||| | Sbjct 2138 GTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCG 2079 Query 1456154 ACAAG-GAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 || | ||| | ||| | | | ||||| || | | || || || || ||||||| Sbjct 2078 ACCCGCGAGTG--TCGTC-GTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCA 2022 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||| | Sbjct 2021 TCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTG 1962 Query 1456272 GTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 | | | |||| ||||| | ||||| || ||||| Sbjct 1961 G-CCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGA 1925 Score = 158 bits (174), Expect = 2e-32 Identities = 236/325 (73%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-ACCGAC 1456510 ||||| ||||| || || || | ||| | | ||| || ||||||| | || | | | Sbjct 1919 TGCACACGGACTTCGCGTGCCTCATGTACTCCAAGCTGGTGAACAAGCTGCCGGAGAGCC 1860 Query 1456511 GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | || | ||||| | ||| || || ||||||| | ||||| || | || ||| Sbjct 1859 GCGTGCACG-AGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCG 1801 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || |||| ||| |||||||||||| | |||||||||||||||||| || || | Sbjct 1800 CTCCCTGTGGAGCTGATCGGCATGAACTCGGG-GCTCATGTGCCAGTACATCGAGTTC-G 1743 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTAC--CGGACGGCCAACC 1456688 | |||||||| ||||| |||| || || | |||| |||| || | | |||| Sbjct 1742 TGGCCGACCGTCTGCTGTACTCGCTGGG-TGTGTCGAAGATCTACAACGTAAAG--AACC 1686 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 ||||| |||||||| |||||||||| ||||||||||||||||||||||| |||| Sbjct 1685 CGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCG 1626 Query 1456749 T-GGCGAGTACGCCAAGGCCGGCGT 1456772 | ||||||||| | |||||||| || Sbjct 1625 TGGGCGAGTACTCGAAGGCCGGTGT 1601 >seq6339 Length=679 Score = 161 bits (178), Expect = 1e-33 Identities = 333/491 (68%), Gaps = 7/491 (1%) Strand=Plus/Minus Query 2133390 ATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGAGGGC 2133449 ||||| | ||| || ||| |||| | ||| | |||||||| |||| ||||| Sbjct 670 ATGGCGGCGGCCGTGACGACGCTGCTCGAGTGCATCGGCGAGGACCCTGCGCGTGAGGGG 611 Query 2133450 CTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCATCGC 2133509 || || | || ||||||||| |||||||||| || || | ||| ||| | || Sbjct 610 CTGGTGAAGACGCCCATGCGCATGGCCAAGGCGCTGCTGTACAACACCAAGGGCTACGGC 551 Query 2133510 ATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACGAGATGGTG 2133569 || ||||||||||| | || ||| | || || |||| ||||||||||| Sbjct 550 CAGAGCCTGGCCGACGTGCTGAACGAGGCCGTGTTCGAGGAGGACCACGACGAGATGGTC 491 Query 2133570 ACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGC 2133629 | |||||||| || ||| | | ||||||||||||||||||| || |||| || | ||| Sbjct 490 ATCGTGCGCGACATCGACCTGTACTCCATGTGCGAGCACCACATGGTGCCGTTCACGGGC 431 Query 2133630 AAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGC 2133689 |||| ||| | |||||| | || |||||| | |||| || |||||| || ||||| Sbjct 430 AAGGTGCACATCGGCTACATCCCGAACGGCAAGGTGCTCGGGCTCAGCAAGCTCGCGCGC 371 Query 2133690 ATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGC- 2133748 || ||| | || || |||| | || || |||||| |||||| |||||||| Sbjct 370 GTCAGCGAGGTCTTCTCGCGCCGCCTGCAGGTGCAGGAGCGACTCACCAAGCAGATCGCC 311 Query 2133749 --CGAGAGCGTGAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGGCCTG 2133806 || | | || || || | || | | ||||| | ||| ||| | |||| | | Sbjct 310 AACGCCATCATGGGCGTCATT--GAGCCCAAG-GGCGTGGCCGTGGTCATTGAGGCCACG 254 Query 2133807 CACATGTGCGTGTGTATGCGCGGCGTGCGCAAAACGGGCTCGAACACGGTCACGCGCGTC 2133866 ||||||||| || |||||||||| | | || | ||| | | ||| |||||| || | Sbjct 253 CACATGTGCATGGTCATGCGCGGCGCGAG-AAGAGCGGCGCCAGCACCGTCACGAGCAGC 195 Query 2133867 CTCCTGGGCGC 2133877 | || ||||| Sbjct 194 GTGCTCGGCGC 184 >seq2372 Length=2131 Score = 154 bits (170), Expect = 2e-31 Identities = 182/245 (74%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||||| |||||||||||| || || || Sbjct 260 TCGTACTCGACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCCGACAC-----GGGCA 206 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 205 TCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 147 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | |||||||| ||| |||| | ||||||| ||| || || |||||| Sbjct 146 GCCTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTCTCCAGCCGCGAG 87 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||||||| || || | | || || || |||| ||||||||| || ||| Sbjct 86 ATCCAGACCGCCGTGCGTCTCATGCTCCCGGGTGAGCTCGCCAAGCACGCCGTGTCGGAG 27 Query 725136 GGCAC 725140 ||||| Sbjct 26 GGCAC 22 >seq11821 Length=1105 Score = 149 bits (164), Expect = 9e-30 Identities = 217/305 (71%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| ||||||||| ||| ||||| || || || || || ||||| ||| Sbjct 316 ACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTTAACGCC 257 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||||||||| || ||||| ||||| || |||| |||| | | ||| || || Sbjct 256 GGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGACGACTCAATT 197 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || ||||| || |||||| | ||||| || || ||||| || |||||| || || Sbjct 196 GAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGCCGGAGGTATT 137 Query 260063 GGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 || | | | | ||||| | || ||| | | |||| | ||||| |||||| Sbjct 136 GGCAT--CAGTATGCACAACATCCGAGCCACCAACAGCTACATTCGAGGCACGAACGGCT 79 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 |||||| ||| | | |||||||| || || ||||||||||| ||||| ||||| |||| Sbjct 78 CGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACGTGGACC 19 Query 260181 AGTGC 260185 || || Sbjct 18 AGGGC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174229460995870