Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq4411 105 8e-18 seq25497 82.4 1e-10 >seq4411 Length=21687 Score = 105 bits (116), Expect = 8e-18 Identities = 214/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 176362 TCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTAT 176421 |||||| | ||||| |||| | ||||| | |||||| |||| ||||||||| | Sbjct 3271 TCGGCAGCGGGAACGGCGCGCGCGCGAGCTGCGTTTGCACCTGTTCGAGGTGATTGTTGT 3330 Query 176422 AGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTCCAGCG 176481 | | ||| || ||| | | | ||| | || || || |||| |||| || | ||| Sbjct 3331 ACAGATGGCAGTCGCCACCGGTCCAGATGAAGTCGCCCACATCCAGGCCGGTTTGCTGCG 3390 Query 176482 CGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGT 176541 | | || ||| |||| | |||||| |||||||||||| || | ||| | ||||| || Sbjct 3391 CCACCATATGCGTCAACAATGCGTAGCTGGCGATGTTGAACGGCACCCCGAGGAAGATGT 3450 Query 176542 CCACGGACCGCTGATTCCAAA---GGCAGGACAGTTTCCCGTTGCGGACATAGAACTGGA 176598 || | || |||| ||| ||||||||| || |||| | || |||||||||| Sbjct 3451 CCGCACTACGTTGAT---AAAGCTGGCAGGACAACTTGCCGTCGGCAACGTAGAACTGGA 3507 Query 176599 A-ACCGTAGTGACACGGCGGCAAAGCCATTAGATCGACCGCCCCGACATTCCAAGCCGAG 176657 | | || | || ||||| |||| ||||| | | | | ||||||||||| || || Sbjct 3508 AGAACGCA-TGGCACGGGGGCAGCGCCATACGCGGAATCTCGCCGACATTCCATGCGGAC 3566 Query 176658 ACCATATGACGACG 176671 || || | ||||| Sbjct 3567 ACGATCAGGCGACG 3580 >seq25497 Length=733 Score = 82.4 bits (90), Expect = 1e-10 Identities = 182/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 176354 CATCAGTGTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTG 176413 || ||| ||||||| || ||| ||||| | ||||| | || | | || |||| ||| Sbjct 295 CACCAGCTTCGGCAACGCACGCGGCTCGCGCGCCAGCTGCTTCTGCGCTTGTTCGATGTG 354 Query 176414 ATTGTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCA 176473 || ||| | ||| | ||| || ||| | | | ||| || ||||||| ||| Sbjct 355 GTTCGAATACAGGTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGT 414 Query 176474 TTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAA 176533 || | ||||||| ||| || || |||||||| |||||| ||||| || | || | Sbjct 415 GACCTGGGCGATCATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAG 474 Query 176534 GAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAA 176593 ||| | || | || ||||| | | |||| || ||||| ||||| || ||||| Sbjct 475 GAAAATATCGCCCGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAA 534 Query 176594 CTGGAAACCGTAGTGACACGGCGGCAAAGCCAT 176626 |||||| | ||| |||||| || ||||| Sbjct 535 CTGGAACATGGTGTGGCACGGCATCAGGGCCAT 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622626050550600