Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2604 100 4e-16 >seq2604 Length=2437 Score = 100 bits (110), Expect = 4e-16 Identities = 241/358 (67%), Gaps = 15/358 (4%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| |||||||| || | |||||| || | || || | ||||| || | Sbjct 1893 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1952 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 1953 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 2011 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-------ACT 39780 || ||||||||||| || || ||||| || || | || | ||| ||| ||| Sbjct 2012 GAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACT 2071 Query 39781 TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | | | | |||||| | ||||| | ||||||||||| ||||| || || || Sbjct 2072 CG---CGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGT 2127 Query 39841 TTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 || || ||| | || | | || | | || | ||| || | || || || || | Sbjct 2128 ATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGC-ATCCTTGATGTACGTGTCAATGA 2186 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 ||| ||||| ||||| |||||||| || || || ||||| || ||||| || || Sbjct 2187 GCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCA 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686589945521400