Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2604 100 4e-16
>seq2604
Length=2437
Score = 100 bits (110), Expect = 4e-16
Identities = 241/358 (67%), Gaps = 15/358 (4%)
Strand=Plus/Plus
Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668
|||| | ||| |||||||| || | |||||| || | || || | ||||| || |
Sbjct 1893 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1952
Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727
| | || |||||||| || || ||||| |||||||| || |||| |||| || || ||
Sbjct 1953 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 2011
Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-------ACT 39780
|| ||||||||||| || || ||||| || || | || | ||| ||| |||
Sbjct 2012 GAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACT 2071
Query 39781 TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840
| | | | |||||| | ||||| | ||||||||||| ||||| || || ||
Sbjct 2072 CG---CGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGT 2127
Query 39841 TTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899
|| || ||| | || | | || | | || | ||| || | || || || || |
Sbjct 2128 ATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGC-ATCCTTGATGTACGTGTCAATGA 2186
Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957
||| ||||| ||||| |||||||| || || || ||||| || ||||| || ||
Sbjct 2187 GCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCA 2244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686589945521400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |