Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq4411 95.1 6e-15 >seq4411 Length=21687 Score = 95.1 bits (104), Expect = 6e-15 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 21954 CTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAG 22013 |||| | || ||||| || || || ||||| ||||| || ||||| |||||||||||||| Sbjct 3476 CTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCGCCAG 3417 Query 22014 CTACGCGCTGCTGACGCACCTCATGGCG--GCCA--CGGTCGGCATGCAGGCCGAGAAGT 22069 |||||| || ||||||| | ||||| || | ||| | | ||| ||| | | Sbjct 3416 CTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGC----GACT 3361 Query 22070 TCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGG 22120 |||||||| | || || |||||||| |||||| || ||| | || |||| Sbjct 3360 TCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGG 3310 Score = 93.3 bits (102), Expect = 2e-14 Identities = 265/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Minus Query 21412 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21471 |||||||| ||||||||||| || || ||||| |||||| ||||| |||| Sbjct 3898 GACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAG 3839 Query 21472 GAGGGCTTCCCCCTGCTCCAGAAGAAGACCACCCCCTTCACCACGATCTTCACCGAGCTC 21531 || || ||||| || || | ||| | | | ||| ||||| | ||| || Sbjct 3838 GAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTG 3779 Query 21532 TCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCACATC 21591 |||| | |||| ||| ||||| ||| || | ||| |||| ||| | |||| Sbjct 3778 CTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATC 3719 Query 21592 TGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTGGCGC 21651 ||| |||||||||| | | | || || | ||||| || |||| || || || |||||| Sbjct 3718 TGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCGC 3659 Query 21652 A-GCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGCTGCT 21710 | |||| ||| ||||| ||||||||||| | | || |||| | | Sbjct 3658 TCGTGGCCAACACCC-GATGGCGGTCACATCGACCAGATTACGCAGATCGTGGAGCAGAT 3600 Query 21711 GCTGAACGAC-CCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGCTCG 21769 | | |||| |||||| || ||| | |||||| || ||||| || | |||| | Sbjct 3599 CC-GCTCGACACCGGACTCGCGTCGCCTGATCGTGTCCGCATGGAATGTCGGCGAGATTC 3541 Query 21770 ACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811 | ||||| ||| | |||||||||||| | |||||||||| Sbjct 3540 CGCGTATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCT 3499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236536099354985