Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_027348.1
Length=73990
Score E
Sequences producing significant alignments: (Bits) Value
seq4411 95.1 6e-15
>seq4411
Length=21687
Score = 95.1 bits (104), Expect = 6e-15
Identities = 125/171 (73%), Gaps = 8/171 (5%)
Strand=Plus/Minus
Query 21954 CTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAG 22013
|||| | || ||||| || || || ||||| ||||| || ||||| ||||||||||||||
Sbjct 3476 CTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCGCCAG 3417
Query 22014 CTACGCGCTGCTGACGCACCTCATGGCG--GCCA--CGGTCGGCATGCAGGCCGAGAAGT 22069
|||||| || ||||||| | ||||| || | ||| | | ||| ||| | |
Sbjct 3416 CTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGC----GACT 3361
Query 22070 TCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGG 22120
|||||||| | || || |||||||| |||||| || ||| | || ||||
Sbjct 3360 TCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGG 3310
Score = 93.3 bits (102), Expect = 2e-14
Identities = 265/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Minus
Query 21412 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21471
|||||||| ||||||||||| || || ||||| |||||| ||||| ||||
Sbjct 3898 GACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAG 3839
Query 21472 GAGGGCTTCCCCCTGCTCCAGAAGAAGACCACCCCCTTCACCACGATCTTCACCGAGCTC 21531
|| || ||||| || || | ||| | | | ||| ||||| | ||| ||
Sbjct 3838 GAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTG 3779
Query 21532 TCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAGGGCTGCCACATC 21591
|||| | |||| ||| ||||| ||| || | ||| |||| ||| | ||||
Sbjct 3778 CTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATC 3719
Query 21592 TGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTGGCGC 21651
||| |||||||||| | | | || || | ||||| || |||| || || || ||||||
Sbjct 3718 TGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCGC 3659
Query 21652 A-GCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGCTGCT 21710
| |||| ||| ||||| ||||||||||| | | || |||| | |
Sbjct 3658 TCGTGGCCAACACCC-GATGGCGGTCACATCGACCAGATTACGCAGATCGTGGAGCAGAT 3600
Query 21711 GCTGAACGAC-CCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGCTCG 21769
| | |||| |||||| || ||| | |||||| || ||||| || | |||| |
Sbjct 3599 CC-GCTCGACACCGGACTCGCGTCGCCTGATCGTGTCCGCATGGAATGTCGGCGAGATTC 3541
Query 21770 ACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811
| ||||| ||| | |||||||||||| | ||||||||||
Sbjct 3540 CGCGTATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCT 3499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 236536099354985
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |