Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq4411 131 3e-25 >seq4411 Length=21687 Score = 131 bits (144), Expect = 3e-25 Identities = 189/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 198332 TCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCG 198391 || || ||||| |||||||| |||||||| | |||||||| ||||||||||||||||| Sbjct 3478 TCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCGCC 3419 Query 198392 TCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTC 198451 |||||||| | ||| ||||| || ||||| | ||| |||||| ||| Sbjct 3418 AGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGACTTC 3359 Query 198452 ATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGG-CCAAGCTCCA 198510 || ||||| || || ||| ||||| ||| ||||| || || |||| ||| | || Sbjct 3358 ATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAAC-GCA 3300 Query 198511 GCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTAT 198570 ||| |||| | |||||| || | ||||| || ||| ||| || || || || || Sbjct 3299 GCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTCGAT 3240 Query 198571 CTTCGATTATAAATTCGAAGATTT 198594 ||||||||| || ||||| || || Sbjct 3239 CTTCGATTACAAGTTCGAGGACTT 3216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768836549945800