Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2604 181 1e-40 >seq2604 Length=2437 Score = 181 bits (200), Expect = 1e-40 Identities = 394/581 (68%), Gaps = 18/581 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 1616 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 1675 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || ||||||||| ||| | || | ||| || | | | || ||||| Sbjct 1676 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 1735 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | |||||||| ||||| || | ||| Sbjct 1736 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACA 1795 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||| || || |||||||| |||| Sbjct 1796 -GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1854 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 1855 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 1907 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 1908 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 1967 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 1968 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 2027 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAACCAC 130198 ||||| |||||||| | |||||||| | | || || ||| | || ||||| Sbjct 2028 CCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCAC 2086 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || | |||||| ||||| || |||| | |||||||| || | ||| || | || Sbjct 2087 TTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGG 2146 Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | | ||| || | | ||| ||||||||| | || ||||| Sbjct 2147 TGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618148130110600