Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2604 134 2e-26 seq22877 95.1 1e-14 >seq2604 Length=2437 Score = 134 bits (148), Expect = 2e-26 Identities = 193/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 2187 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 2128 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 2127 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 2068 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 2067 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 2012 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 2011 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1952 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 1951 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1922 >seq22877 Length=809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 ||||| || |||| ||| || ||| | || ||||| ||||||||||| || || | | | Sbjct 780 CGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 721 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 ||||| ||| ||||||||| || || |||| ||||| |||| || ||| | ||| || Sbjct 720 GGCAAGTGGAGTCTCTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGGCGA 662 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || ||||| || |||||||||| Sbjct 661 CGAATTCGAGGCCCTCTATGAAAAGTACGAG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582990057627400