Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2070 93.3 1e-13 seq23032 89.7 2e-12 seq11610 89.7 2e-12 seq36575 84.2 7e-11 >seq2070 Length=5564 Score = 93.3 bits (102), Expect = 1e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || || || || || ||||| || || || || | Sbjct 1056 TTTAGTTTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 1115 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || || || || || || || ||||| || || ||||| | Sbjct 1116 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 1175 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || || || || || ||||| || || | Sbjct 1176 CGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACG 1235 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || | ||||| || || || || || || |||||||||||| Sbjct 1236 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291 >seq23032 Length=804 Score = 89.7 bits (98), Expect = 2e-12 Identities = 381/597 (64%), Gaps = 5/597 (1%) Strand=Plus/Minus Query 350075 ATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCT 350134 ||||| ||||||||||| || || | || | || | || | || ||||| ||| Sbjct 795 ATTACGCGTGCTCGGTTCGAGGATCTGTGCAACGAGTTCTTCCGCAAGACGATGGACCCT 736 Query 350135 GTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTA 350194 |||| | || || || | || |||| || | || | | || || ||| | Sbjct 735 GTGGCGCAGGTGTTGCGGGACTCGAAGCTGTCGAAGAGCCAAGTGAACGAGGTGGTTCTG 676 Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 || || || || || ||||| || ||||| || ||||| | || ||||| |||||| Sbjct 675 GTCGGAGGGTCGACTCGTATCCCGAAAGTGCAGCAGTTGTTGATGGACTTTTTCAATGGC 616 Query 350255 AAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313 || || | ||| || || || || || || ||||| || || ||||| || | || || Sbjct 615 AAGGAGCTGTTCAAG-TCGATCAACCCGGACGAAGCAGTCGCCTATGGAGCCACCGTGCA 557 Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTC--TAAAATTG-ATGATCTATTACTACTAGA 350370 || |||| || ||| ||| | || || ||| | ||||| |||| || || Sbjct 556 AGCCGCTATCCTAAGTGGCAATGACTCGTCCGCCAAGTTGCAGGATCTGCTACTGCTGGA 497 Query 350371 TGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCC 350430 || | || || |||||||| || || || |||||| ||| ||||| || || || Sbjct 496 CGTGGCCCCGCTGTCGCTTGGGTTGGAGACCGCTGGTGGAGTCATGACGAAACTCATCCC 437 Query 350431 TAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCA 350490 | || | || | ||| | || ||| | || | || || || | |||||| || || Sbjct 436 GCGTAACACGACGATTCCTTCCAAGAAGACGCAGTCGTTCTCGACGTATGCAGACAACCA 377 Query 350491 GCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAA 350550 | | | ||| ||||| || || || || || || | || || ||| || Sbjct 376 GTCCGGGGTGTTGATTCAGGTGTTCGAGGGCGAGCGCACAATGACCCGTGACAATCATCT 317 Query 350551 ACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGA 350610 ||| ||| | || | || | || || || |||||| | || || || ||||| || Sbjct 316 ACTGGGAAAGTTCAATCTGGACGGCATCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGA 257 Query 350611 AGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 || | |||||| ||||| || || ||||| || || | || || || || || Sbjct 256 CGTAACGTTCGATGTTGATGTCAACGGCATTTTGAACGTGTCAGCCGTGGAGAAGTC 200 >seq11610 Length=1322 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 830 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 771 Query 74548 TCGGGCA 74554 ||||||| Sbjct 770 TCGGGCA 764 >seq36575 Length=508 Score = 84.2 bits (92), Expect = 7e-11 Identities = 231/352 (66%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026 ||||| || ||||||| || || |||||||||||| | | || || | |||| | Sbjct 443 CGTCGTCTGCGAACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGCT 384 Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086 | ||||| || || ||||| ||||||| || ||| || | || || |||||| Sbjct 383 TACATTGAGATCGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGCT 324 Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAG 350144 || || || || |||| || | | ||| || ||||| || ||||| || | Sbjct 323 CGTTTCGAGGA--CATGTGCGGCGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAGG 266 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | || || || ||||||| | ||| | | || || || | || ||||| | Sbjct 265 TCCTCCGTGACGCCAAGCTGTCCAAGAGCCAGGTGCACGAGGTCGTCCTGGTCGGTGGCT 206 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264 | || ||||| || || || || ||| | || || || || || || ||||| || || Sbjct 205 CCACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCCA 146 Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || || || ||||| ||||| || || ||||| | || ||||| Sbjct 145 ACAAGTCGATCAACCCTGATGAGGCTGTCGCCTACGGTGCCACCGTCCAGGC 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514533453794405