Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2070 93.3 1e-13
seq23032 89.7 2e-12
seq11610 89.7 2e-12
seq36575 84.2 7e-11
>seq2070
Length=5564
Score = 93.3 bits (102), Expect = 1e-13
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
|||| | |||||||| | | || || || || || || ||||| || || || || |
Sbjct 1056 TTTAGTTTCCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGT 1115
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | || || || || || || || || || || ||||| || || ||||| |
Sbjct 1116 AGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGT 1175
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || || || || || ||||| || || |
Sbjct 1176 CGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACG 1235
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
| || || || || || | ||||| || || || || || || ||||||||||||
Sbjct 1236 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291
>seq23032
Length=804
Score = 89.7 bits (98), Expect = 2e-12
Identities = 381/597 (64%), Gaps = 5/597 (1%)
Strand=Plus/Minus
Query 350075 ATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCT 350134
||||| ||||||||||| || || | || | || | || | || ||||| |||
Sbjct 795 ATTACGCGTGCTCGGTTCGAGGATCTGTGCAACGAGTTCTTCCGCAAGACGATGGACCCT 736
Query 350135 GTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTA 350194
|||| | || || || | || |||| || | || | | || || ||| |
Sbjct 735 GTGGCGCAGGTGTTGCGGGACTCGAAGCTGTCGAAGAGCCAAGTGAACGAGGTGGTTCTG 676
Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254
|| || || || || ||||| || ||||| || ||||| | || ||||| ||||||
Sbjct 675 GTCGGAGGGTCGACTCGTATCCCGAAAGTGCAGCAGTTGTTGATGGACTTTTTCAATGGC 616
Query 350255 AAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCA 350313
|| || | ||| || || || || || || ||||| || || ||||| || | || ||
Sbjct 615 AAGGAGCTGTTCAAG-TCGATCAACCCGGACGAAGCAGTCGCCTATGGAGCCACCGTGCA 557
Query 350314 GGCATCTATTTTATCTGGAAATAAGAGTTC--TAAAATTG-ATGATCTATTACTACTAGA 350370
|| |||| || ||| ||| | || || ||| | ||||| |||| || ||
Sbjct 556 AGCCGCTATCCTAAGTGGCAATGACTCGTCCGCCAAGTTGCAGGATCTGCTACTGCTGGA 497
Query 350371 TGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCC 350430
|| | || || |||||||| || || || |||||| ||| ||||| || || ||
Sbjct 496 CGTGGCCCCGCTGTCGCTTGGGTTGGAGACCGCTGGTGGAGTCATGACGAAACTCATCCC 437
Query 350431 TAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCA 350490
| || | || | ||| | || ||| | || | || || || | |||||| || ||
Sbjct 436 GCGTAACACGACGATTCCTTCCAAGAAGACGCAGTCGTTCTCGACGTATGCAGACAACCA 377
Query 350491 GCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAA 350550
| | | ||| ||||| || || || || || || | || || ||| ||
Sbjct 376 GTCCGGGGTGTTGATTCAGGTGTTCGAGGGCGAGCGCACAATGACCCGTGACAATCATCT 317
Query 350551 ACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGA 350610
||| ||| | || | || | || || || |||||| | || || || ||||| ||
Sbjct 316 ACTGGGAAAGTTCAATCTGGACGGCATCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGA 257
Query 350611 AGTCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667
|| | |||||| ||||| || || ||||| || || | || || || || ||
Sbjct 256 CGTAACGTTCGATGTTGATGTCAACGGCATTTTGAACGTGTCAGCCGTGGAGAAGTC 200
>seq11610
Length=1322
Score = 89.7 bits (98), Expect = 2e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547
|||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 830 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 771
Query 74548 TCGGGCA 74554
|||||||
Sbjct 770 TCGGGCA 764
>seq36575
Length=508
Score = 84.2 bits (92), Expect = 7e-11
Identities = 231/352 (66%), Gaps = 4/352 (1%)
Strand=Plus/Minus
Query 349967 CGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACC 350026
||||| || ||||||| || || |||||||||||| | | || || | |||| |
Sbjct 443 CGTCGTCTGCGAACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGCT 384
Query 350027 TCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCT 350086
| ||||| || || ||||| ||||||| || ||| || | || || ||||||
Sbjct 383 TACATTGAGATCGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGCT 324
Query 350087 CGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAG 350144
|| || || || |||| || | | ||| || ||||| || ||||| || |
Sbjct 323 CGTTTCGAGGA--CATGTGCGGCGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAGG 266
Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204
| | || || || ||||||| | ||| | | || || || | || ||||| |
Sbjct 265 TCCTCCGTGACGCCAAGCTGTCCAAGAGCCAGGTGCACGAGGTCGTCCTGGTCGGTGGCT 206
Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTT 350264
| || ||||| || || || || ||| | || || || || || || ||||| || ||
Sbjct 205 CCACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCCA 146
Query 350265 CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
| || || || || ||||| ||||| || || ||||| | || |||||
Sbjct 145 ACAAGTCGATCAACCCTGATGAGGCTGTCGCCTACGGTGCCACCGTCCAGGC 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514533453794405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |