Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2604 239 5e-58 seq22877 201 1e-46 seq11821 167 3e-36 seq16624 93.3 5e-14 >seq2604 Length=2437 Score = 239 bits (264), Expect = 5e-58 Identities = 560/831 (67%), Gaps = 33/831 (4%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| | | ||||||| | ||||| | ||||||||||| |||| || || Sbjct 2424 TCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACCTG 2365 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 | || |||||| | ||||||||| || |||||||||||||| || || || || Sbjct 2364 ACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGC 2305 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || |||| || || | | ||||||||| ||| || || ||| | | |||||||| Sbjct 2304 ATCGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGC 2245 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| | ||| ||| || |||| |||||||| ||| ||| ||||| | Sbjct 2244 TGCTTCTACGGTTTCCAGATCGC-CATCGAGAACATCCACTCAGAGGTGTATTCGCTGCT 2186 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 || || | || |||||||| || ||||||| ||| | |||||||| || || Sbjct 2185 CATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATAC 2126 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTG-GAGCAT 59970 | ||| || || | ||||| | ||||| | ||||| || | || | ||| | Sbjct 2125 GATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGG-TGCGACCCGCGAGTGT 2067 Query 59971 CATT-TGCAC--AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 | | | | | | ||||| | || || ||| ||||| || ||||||||||| |||| Sbjct 2066 CGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCT 2007 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCA 60087 ||||||| | || ||||||||||| ||||| ||||||||||| |||||||| ||||| | Sbjct 2006 CGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGA 1947 Query 60088 ACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGC-TCTATTCA 60146 |||||||||| ||| ||||||||| | || ||| || || ||| | | | || || Sbjct 1946 ACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC-GTGCCTCATGTACTCC 1888 Query 60147 CACCTATTGGAAAAATGCCCTTCCAAGGATA------TTCACAAGATTGTTCAGTGGGCT 60200 | || || | || || || ||| | | ||| |||| || | | | Sbjct 1887 AAGCTGGTGAACAA----GCTGCC--GGAGAGCCGCGTGCACGAGATCGTGC-GCGACGC 1835 Query 60201 TGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGA 60259 |||| | | ||| ||||||| | || |||| || | || || || ||| | Sbjct 1834 GGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAA 1775 Query 60260 CGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATG-----GCCCAG 60314 | | || ||| |||||||| |||| || || ||||| || || || | Sbjct 1774 CTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGG 1715 Query 60315 TTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCG 60374 | || |||| || ||| ||| || ||||| |||||||||||||| | |||||| Sbjct 1714 TGTGTCGAAG-----ATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCG 1660 Query 60375 TTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 || | || ||||||||||| || |||||||| || || || || || ||| Sbjct 1659 CTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTACTCGAAG 1609 >seq22877 Length=809 Score = 201 bits (222), Expect = 1e-46 Identities = 368/535 (69%), Gaps = 8/535 (1%) Strand=Plus/Minus Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 |||| ||||||| || || | |||| ||||||||||| || ||| |||||| || Sbjct 568 CCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAA 509 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTC 19911 ||| ||||| ||||| ||||| || |||| | || ||| | |||||| | Sbjct 508 CCAGCAGAACCTCGGCACGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACAC 449 Query 19912 CAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA 19971 |||||||||| || ||||| || ||||||| || ||||| | ||||| | Sbjct 448 GTCGCCGGACGAGGTGGCTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGA 389 Query 19972 GGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCT 20031 || ||| ||| || ||||| || ||||| ||| ||||| || || | Sbjct 388 GGAAGGAGTTTTCAACTACCAGAAGTTGTATGAAGTGACGAAGGTGGTCACCCGCAACTT 329 Query 20032 GAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATAT 20088 || |||||||| |||| ||||| || ||||||| |||||||| || || Sbjct 328 AAACAAGGTCATCGACGTCAACTACTACCCCGTGATCGAGGCG---CGCAAGTCCAACAT 272 Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| ||||| || |||| || |||||||||||||| || |||| || || | | Sbjct 271 GCGTCACCGCCCCATCGGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCCTCATGAA 212 Query 20149 CCTCTCATTCGACGATCCC-AAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 | | | ||||| || | ||||| || |||||||||||| |||||||||| || | | Sbjct 211 CTACGCGTTCGA-GAGCGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAGACCATCT 153 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 || ||| ||| | | ||| || ||||||| || ||||||||||||||||| Sbjct 152 ACTTCGCCGCCATGGAGACGTCGATGGAGATCGCCAAGGAACTCGGCCCGTACGAGACGT 93 Query 20268 TCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCAC 20322 || |||| |||||||| | |||| ||| ||||| ||||||||||||||||| Sbjct 92 TCCAGGGCTCGCCCGCTAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCAC 38 Score = 140 bits (154), Expect = 4e-28 Identities = 355/532 (67%), Gaps = 16/532 (3%) Strand=Plus/Plus Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| || | ||| |||| | || ||||| |||| |||||||||||| Sbjct 44 CCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTAC 103 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCAT-GACTCGAGCAGGGCCGCGTGGTACACAGCCTC 78806 | || |||||||||| || ||| ||| || ||| ||| ||| | | ||| Sbjct 104 GGGCCGAGTTCCTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTC 162 Query 78807 GAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCG---TCGAACGAAAGGCCGAGCAT 78863 ||||||| |||||||||||| || ||||| |||| ||||||| | | | Sbjct 163 GAAGATGTTCTTGTTGAGCTCCCGGGCCTT---CTCGCTCTCGAACGCGTAGTTCATGAG 219 Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 || || | || || |||||||||||||| ||| |||| || ||||| ||||||||| Sbjct 220 GATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGA 279 Query 78924 CTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACG 78980 ||| || ||||||| || ||||| |||| |||||||| ||| | ||| || Sbjct 280 CTTGCG---CGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCG 336 Query 78981 CGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATC-AAAATGATTTCCTTTGATGA 79039 ||||| ||| ||||| || ||||| || | | | |||| ||||| | || Sbjct 337 GGTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAACTCCTTCCTCC-ACGA 395 Query 79040 AAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCT 79099 | | || || || || |||| ||||||||| ||| ||||||||| | || Sbjct 396 ACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACT 455 Query 79100 CGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCT 79159 | || | || ||| || || || ||| ||||||| ||||| |||||| || Sbjct 456 CCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACT 515 Query 79160 TCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 | ||| ||||||||||| |||| | ||| || ||||| | ||| Sbjct 516 TGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTG 567 >seq11821 Length=1105 Score = 167 bits (184), Expect = 3e-36 Identities = 264/371 (71%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||||| |||||||||| |||||||| || |||| ||| || || || |||||||| Sbjct 3 CGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGG 62 Query 79582 ACGATGCCGTCGG-CGACGCCGTTCGTCCCGTTGATTCGTGTACC----GCTCGCCCGAA 79636 | |||||| | || ||| ||||||||| || | || | ||| | | | || || | Sbjct 63 ATGATGCCATTGGACGA-GCCGTTCGTGCC-TCGAAT---GTAGCTGTTGGTGGCTCGGA 117 Query 79637 TGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 |||| | ||| ||| || || || |||| ||| || ||||| || || | ||| Sbjct 118 TGTT-GTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTT 176 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 | ||| ||||| ||||| || || |||||||| | ||| || | |||||||| |||| Sbjct 177 AACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGAC 236 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTT 79815 | |||||| ||| |||||||| || || ||||| || || |||||||| ||| || Sbjct 237 AGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATT 296 Query 79816 TGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACC 79875 || ||| || |||||||||||| | || || | || | ||||||||| | Sbjct 297 TGCGACATGAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGT 356 Query 79876 GCGACGCGCAT 79886 || |||||||| Sbjct 357 GCCACGCGCAT 367 >seq16624 Length=1114 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 159479 CGCTTCTGGGGGTCGCTCAGGACCTCATAGGCCTCCTGGACTTTCTTGAACTTCTCGGCG 159538 ||||||| |||||| ||| ||||| |||||| || || ||||||| ||| | | Sbjct 835 CGCTTCTCCGGGTCGGACAGCACCTCGTAGGCCACCGTGATGGTCTTGAAGAGCTCCGGG 776 Query 159539 TCACCGCCCTTGTCGGGGTGGTGCTCGCGGGCAAGTTTGCGGTACGCCTTTTTGATGTCG 159598 || ||||||||||| ||||||| || | | || || |||||||| ||||| ||||| ||| Sbjct 775 TCGCCGCCCTTGTCCGGGTGGTTCTTGAGCGCCAGCTTGCGGTAGGCCTTCTTGATCTCG 716 Query 159599 G 159599 | Sbjct 715 G 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548270181644400