Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2604 174 2e-38 seq11821 145 8e-30 seq940 143 3e-29 seq19099 138 1e-27 >seq2604 Length=2437 Score = 174 bits (192), Expect = 2e-38 Identities = 543/825 (66%), Gaps = 27/825 (3%) Strand=Plus/Plus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| || || || || || ||||| || |||||||||||||| || | || |||||| | Sbjct 1609 CTTCGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 1668 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGC--- 74572 |||||||||||||| ||||||||| | ||| || |||| | || | | | Sbjct 1669 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGAT---CTTCGACACACCCAGCGAGTA 1725 Query 74573 CATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 || || || || ||||| || | |||||||| ||| |||| | ||||||||| Sbjct 1726 CAGCAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGAT 1785 Query 74633 GAGTTTGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGA 74691 || | ||| || || | || | ||||| ||| | ||| | | | | | Sbjct 1786 CAGCTC-CACAGGGAGCGAGTCACGCACGAACTCGTGCTCGA--TCGTCACCGCGTCGCG 1842 Query 74692 CA--ATCTTGTGAATG----TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GC 74744 || |||| ||| | | ||| || || ||| | | ||| | ||||| | | Sbjct 1843 CACGATCTCGTGCACGCGGCTCTCCGGCAG----CTTGTTCACCAGCTTGGAGTACATGA 1898 Query 74745 GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAA 74804 | |||| | || ||| ||| ||| || || | ||| |||| || ||||| || Sbjct 1899 GGCACG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTC 1957 Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||||||||| || || |||||||| | ||| ||||||| ||||| || || |||| Sbjct 1958 AGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAG 2017 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CA-TCGGAAG 74922 |||||||| || ||| || || || | || || | || | ||| | || ||| | Sbjct 2018 AAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGG 2077 Query 74923 TCAT-CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||| | | ||||| | ||||| || || |||| |||||||| || Sbjct 2078 TCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCA 2137 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | | ||| ||||||| | |||||||| | | ||||||| | || || ||| Sbjct 2138 CGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATAC 2197 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 2198 ACCTCTGAGTGGATGTTCTCGATGG-CGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGG 2256 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || || |||||| | | ||||| | ||||||||||| ||| Sbjct 2257 CACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGC 2316 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCA 75220 ||||| || ||||| || ||||| ||| ||||| | ||| || || || |||| Sbjct 2317 AGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCA 2376 Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||||||||| | ||| || | ||||||| |||||||||| Sbjct 2377 GTCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAA 2421 >seq11821 Length=1105 Score = 145 bits (160), Expect = 8e-30 Identities = 229/320 (72%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| |||| || || ||||| ||||| || || || || ||| Sbjct 319 GAGACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTTAAC 260 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | ||| || ||||| |||||||| |||| ||| | || ||||| Sbjct 259 GCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGACGACTCA 200 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| ||| | ||| | |||||| ||||| || ||| | || ||| Sbjct 199 ATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGCCGGAGGT 140 Query 53423 ATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACG 53480 || || ||| ||| | ||| |||| || | | || | || || | || ||||||| Sbjct 139 ATTGGCATCAGTATGCAC-AACATCCGAGCCACCAACAGCTACATTCGA-GGCACGAACG 82 Query 53481 GCGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || ||| || |||| ||| | || ||||| || || || ||| |||| || |||||||| Sbjct 81 GC-TCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACGTG 23 Query 53540 AACCAGGGTGGTGGGAAGCG 53559 ||||||| || || ||||| Sbjct 22 GACCAGGGCGGAGGCAAGCG 3 >seq940 Length=1581 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | ||| || ||||| ||||| || || || || ||||||| Sbjct 739 GCGTGAAGATGTAACGAGGGCTAGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACT 680 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | || || |||||||||| ||||||||| | ||| |||| |||| Sbjct 679 GACCGGACGGATACAGCAGCGGAAGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCA 620 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| || | || || |||||||| || ||||| || || | ||| | Sbjct 619 CAATCGTCGAGTGTAACGAAGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCAGTAAC 560 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | || | ||| |||||||||| || |||| || || ||| ||||||||| ||| || Sbjct 559 CAGCAAGCTGTGCCACCTTCACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAAAGCA 500 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||||||||| || ||| | || || ||||| Sbjct 499 CCTTGCGCTGCGAGATTTTAAGTCCATCGACCAC 466 Score = 118 bits (130), Expect = 1e-21 Identities = 279/412 (68%), Gaps = 17/412 (4%) Strand=Plus/Minus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || ||||||||||| || ||||| || || | |||||| | || ||| ||||| Sbjct 892 AACCC-GTACCGATACCCTCCGCGCCATTAATGAGCAGCATCGGGATGATAGGCACGTAA 834 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGA-CGTACTTGAGCACCGCATTGTCACT 117267 || | ||||| || | | ||| ||||| || | | || | | ||||| ||| Sbjct 833 TACACGGGCTCAACGGGGAAACCATCGTC-GTCAGCATAGCGCAAGAGCGCATCATCATC 775 Query 117268 CGGATCGAATATGTTCTTGGTCCACG-GTGCT-----AGGCGAGTGAAAATGTAACGAGA 117321 | ||||| | | | || ||||| || | ||||| |||||||||| Sbjct 774 TTCAGGGAATA----CAAGA--CGCGTGTGCTTTTGAAGCAGCGTGAAGATGTAACGAGG 721 Query 117322 GCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG 117381 ||| || ||||| ||||| || || || ||||| || || || ||| | || || Sbjct 720 GCTAGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACTGACCGGACGGATACAGCAG 661 Query 117382 GTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCT 117441 |||||||||| |||||| |||| || |||| ||| |||||||| || | Sbjct 660 CGGAAGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCACAATCGTCGAGTGTAACGA 601 Query 117442 CGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 ||||| || ||||| || ||||| || || | || ||| || || ||||| ||||||| Sbjct 600 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCA-GTAACCAGCAAGCTGTGCCACCT 542 Query 117501 TCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTG 117552 ||| || ||| || || ||| || ||||| ||| |||||||||||| Sbjct 541 TCACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAAAGCACCTTGCGCTG 490 >seq19099 Length=950 Score = 138 bits (152), Expect = 1e-27 Identities = 252/369 (68%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | ||| || | ||| ||| || | Sbjct 454 CCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACCAT 395 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||||| | ||||||||| || || ||||| | || ||||||| ||| Sbjct 394 TCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAGGA 335 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 || | ||||| ||||| | | ||| |||||| || || || | |||||| ||| Sbjct 334 TCATAGATCCGGCGAGTGAGTTGTTCCAAGTTCGTGAAAATATAACGAGCGCTGGCTGCA 275 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || ||||| || ||||| || ||| ||||||| || |||| Sbjct 274 TCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGATGTTG 215 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || || || | |||||||| || || || |||||||| |||| || ||| Sbjct 214 TTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAAACTCTGCTCGCCG 155 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 || || ||||| | ||||| | | || || ||||| || |||||||||| |||| | Sbjct 154 TGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCAGCTCCGAC 95 Query 152236 GTCAGGTTC 152244 ||||||| Sbjct 94 TACAGGTTC 86 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATTG 117363 |||||||| ||||||| ||| || ||||||||||| || | ||| |||||||||||| || Sbjct 301 GTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAA-ACGCGTACCGAACTG 243 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | ||| || ||||| | ||||||| || ||||||| ||||||| |||||| Sbjct 242 ACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGAC 183 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || || | ||| ||| || || || ||||| | ||||| | ||| || || Sbjct 182 GATACAGCCCTGCAAACTCTGCTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACC 123 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTC 117520 |||| || |||||||||| || ||| ||||||| Sbjct 122 AGCCAATTGTGCCACCTTCAGCTCCGACTACAGGTTC 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546961989173000