Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq22877 131 2e-25 seq940 127 2e-24 seq2070 123 3e-23 seq2604 111 2e-19 seq19099 87.8 2e-12 >seq22877 Length=809 Score = 131 bits (144), Expect = 2e-25 Identities = 486/752 (65%), Gaps = 16/752 (2%) Strand=Plus/Plus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598 |||||||||||| ||| |||||||||| || || || ||| ||||||||||||| Sbjct 44 CCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTAC 103 Query 80599 GGGCCCTCCGTCTTGGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCAC 80655 ||||| |||||| | ||| ||| |||||| ||| ||| || ||| | Sbjct 104 GGGCCGAGTTCCTTGGCGATCTCCATCGACGTCTCCAT---GGCGGCGAAGTAGATGGTC 160 Query 80656 TCAAAGACGCCCTTGTTCACACCGCGCGCC-TGTGGGTCGTCGAACGACAAGCCCATCAT 80714 || |||| | |||||| | | || ||| | | | || ||||||| || ||| | Sbjct 161 TCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTC-TCGAACGCGTAGTTCATGAG 219 Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 || ||| |||| || |||||||| ||||| || |||| |||||||| ||| |||| || Sbjct 220 GATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGA 279 Query 80775 -TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 | || | ||||| | ||||| |||| |||||||| ||| | |||||| | Sbjct 280 CTTGCGC-GCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGG 338 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCG--AATTGGTTCCCCTTCACAAA 80891 | || ||| || || |||| | ||||| ||| | || | || ||| ||| || Sbjct 339 TGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAACTCCTT--CCTCCACGAA 396 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || || || ||||||| |||||||| |||||||| || | || |||| Sbjct 397 CTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTC 456 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | | || ||| || || || || || || ||||| | |||||| ||||| Sbjct 457 CATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTT 516 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 | |||| ||||||||||| |||| | || || ||||||| ||| | | | Sbjct 517 GCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCGATCTGGGCGTCCAA 576 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 |||||| ||| | || | || |||| | ||||||| || || | | | || Sbjct 577 TATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTA 636 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 ||| | || | ||||| | | | || ||| ||| | ||| |||||| Sbjct 637 CTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTT 696 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 |||||| | || ||| | | | | || || ||||||||| ||||| | Sbjct 697 AGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCAC 756 Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG 81283 ||| |||||| |||||||||||| |||||| Sbjct 757 CCAAAGGGCGTAGAACAGGTCGCG--AGCGCG 786 >seq940 Length=1581 Score = 127 bits (140), Expect = 2e-24 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 31999 TCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTG 32058 || |||||||||||| | | |||||| || ||| || || |||| || |||||||| Sbjct 487 TCGCAGCGCAAGGTGCTTTTCGCCTGTCTGAAGCGCAAGCTAACGAGCGAGGTGAAGGTG 546 Query 32059 GCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCTATCACCACGGCGAGGCGTCGC 32116 || ||||| | || ||| ||| || || |||||||| |||||||||||||| ||| Sbjct 547 GCACAGCTTGCTGGTTAC--TGCAGTGAACACACGGCCTACCACCACGGCGAGGCTTCGT 604 Query 32117 TCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTAC 32176 | || || ||||| ||| | || ||| |||| || || | || ||||| | | Sbjct 605 TACACTCGACGATTGTGAACATGGCACAGGACTTCGTGGGCTCCAACAACCTTCCGCTGC 664 Query 32177 TCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCC 32236 | | || || || |||||||| || || || || ||||| ||||| || ||| | | Sbjct 665 TGTATCCGTCCGGTCAGTTTGGTACTCGACTACAGGGAGGCAAAGATGCCGCTAGCCCTC 724 Query 32237 GTTACATCTTCAC 32249 ||||||||||||| Sbjct 725 GTTACATCTTCAC 737 >seq2070 Length=5564 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||||||||| || |||||||| || || || || || ||| | Sbjct 1291 AATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTC 1232 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || || | || ||||| || ||||||||||||||||| || || || ||||| Sbjct 1231 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 1172 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 |||||| || || || || || ||||| || ||||| | || || || ||| ||||| | Sbjct 1171 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGC-GACTACA 1113 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| ||||| || || || || || || |||| || || |||||| Sbjct 1112 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGGCTGCGTGGTGGA 1063 >seq2604 Length=2437 Score = 111 bits (122), Expect = 2e-19 Identities = 327/501 (65%), Gaps = 5/501 (1%) Strand=Plus/Minus Query 64351 TTCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAAC 64410 |||||||||| ||||||| | || || | | || || | ||||||| ||||| | | Sbjct 2421 TTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACCTGA-C 2363 Query 64411 TCACAG-GAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAAT 64469 ||| || | | |||||||||| || || || |||||||| | || ||||| || Sbjct 2362 GGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCAT 2303 Query 64470 TGTGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTC 64529 ||| ||||| ||| | | || || | || || || ||| | || ||||| || | Sbjct 2302 CGTGAACGAGAACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTG 2243 Query 64530 ATTCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGAT 64589 ||||| | | ||| | ||| | || || ||| ||||||||| | || Sbjct 2242 CTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCAT 2183 Query 64590 TGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGT 64649 ||||| || | |||| | |||||||| ||| | | || || || || | Sbjct 2182 TGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGAT 2123 Query 64650 ACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATC---GTGGGTCGTC 64706 || ||| | || || || | ||||| || |||| | | | | |||||| Sbjct 2122 CCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTC 2063 Query 64707 GTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATT 64766 || ||||||| || || || |||||| || || ||||| || || || || Sbjct 2062 GTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTT 2003 Query 64767 CTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGA 64826 ||| || || |||||||| || ||||| ||||| ||||| || ||| || |||||||| Sbjct 2002 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGA 1943 Query 64827 GCTGATCTCTCGGGACGAGGG 64847 ||||||| || |||||||| Sbjct 1942 GCTGATCAGCCGTGACGAGGG 1922 >seq19099 Length=950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 32034 GAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGC 32093 |||||||| | || |||||||||| || || | || || ||| ||||||| | || Sbjct 86 GAACCTGTAGTCGGAGCTGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGC 145 Query 32094 CTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGT 32153 || || ||||||||| | | |||||| || |||||| | |||||| ||||||| Sbjct 146 GTACCATCACGGCGAGCAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGT 205 Query 32154 CGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGG 32213 ||| || ||| | || | || |||| || ||||| || || || | || Sbjct 206 CGGAAGCAACAACATCCACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGG 265 Query 32214 TGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||||||| || ||| | ||||| || ||||| Sbjct 266 CGGCAAGGATGCAGCCAGCGCTCGTTATATTTTCAC 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570045669041200