Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq22515 152 4e-32
seq25497 132 4e-26
>seq22515
Length=820
Score = 152 bits (168), Expect = 4e-32
Identities = 299/436 (69%), Gaps = 12/436 (3%)
Strand=Plus/Minus
Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923
||||| ||| ||||| || || | | || || ||||| || || || | ||||
Sbjct 471 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 412
Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983
|||||||| || || | || || | || || || |||| ||| || | | ||||
Sbjct 411 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 352
Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043
||||||||||| || || || || || |||||||| |||| | |||||| | ||| ||
Sbjct 351 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 292
Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103
|| | ||| |||||| |||||| ||||| || | ||||||||| || || |||||
Sbjct 291 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 233
Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158
| || || || || ||||| || ||| | ||| || | ||| || | |
Sbjct 232 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 176
Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217
||| | | | | ||| | | | ||||| ||||| ||| || | ||||||
Sbjct 175 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 118
Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277
|| |||||||||||||| |||||| ||||| | ||||||||| ||||| ||||||||
Sbjct 117 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 58
Query 30278 AGGTCTCCCTCTTCCC 30293
||||| || ||||||
Sbjct 57 AGGTCGCCAACTTCCC 42
>seq25497
Length=733
Score = 132 bits (146), Expect = 4e-26
Identities = 145/190 (76%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961
||| || || |||||| | || || || || ||| ||| ||||||||||| || || ||
Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426
Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021
||| | ||||| || | |||||||||||| || || || | ||||| || || ||
Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486
Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACATGG 30080
||| | |||||| ||||| |||||||| | |||| |||| |||||| ||||| ||||||
Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGG 545
Query 30081 CGTGGCACGG 30090
|||||||||
Sbjct 546 TGTGGCACGG 555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406126510896420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |