Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq22515 152 4e-32 seq25497 132 4e-26 >seq22515 Length=820 Score = 152 bits (168), Expect = 4e-32 Identities = 299/436 (69%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | | || || ||||| || || || | |||| Sbjct 471 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 412 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 411 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 352 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 351 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 292 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 291 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 233 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 232 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 176 Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 175 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 118 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 117 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 58 Query 30278 AGGTCTCCCTCTTCCC 30293 ||||| || |||||| Sbjct 57 AGGTCGCCAACTTCCC 42 >seq25497 Length=733 Score = 132 bits (146), Expect = 4e-26 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| || || |||||| | || || || || ||| ||| ||||||||||| || || || Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 ||| | ||||| || | |||||||||||| || || || | ||||| || || || Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACATGG 30080 ||| | |||||| ||||| |||||||| | |||| |||| |||||| ||||| |||||| Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGG 545 Query 30081 CGTGGCACGG 30090 ||||||||| Sbjct 546 TGTGGCACGG 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406126510896420