Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq7137 96.9 1e-15 >seq7137 Length=12292 Score = 96.9 bits (106), Expect = 1e-15 Identities = 243/369 (66%), Gaps = 3/369 (1%) Strand=Plus/Minus Query 24344 CAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAG 24403 ||| ||||| ||||||||||| |||||||||||||| | ||||| | || | || Sbjct 8449 CAGCGCCGTATTCGGGTAGCGAAGCTTCGCGTCGATGATCTCGGCGATGCTCTCAATGTT 8390 Query 24404 CATGGTGTCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTG 24463 | | || || ||||| | || | || |||||| || | ||||| || | ||| Sbjct 8389 CGTCGTATCAGCGATCGTGCTGATATTTGCGTTCGGGGTGATTCGGCGCACTCTTACCGT 8330 Query 24464 CCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGGT 24523 ||||||| | | ||| |||| || || ||| || || ||||| | ||| || Sbjct 8329 CCAGCCAGACGCCGACGCGGGCAAGTTGACGCGGTGGCTGCGTTCGTAAGTCGAGGTCGT 8270 Query 24524 CTTGCCATCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGATC 24583 ||| || |||| ||| || || ||||| | ||||| ||| | | ||||| Sbjct 8269 CTTCCCGTCGAATGCCGAAGACAAGACTTCCTGGAACGCGCCACCGGCAACCGAAAGATC 8210 Query 24584 TACGGCATATTCGATCCGGTACCCGCCGATGTTGCCGTTG---GTGTCCTGCTGCTGGAG 24640 | || |||||||| ||||| ||| ||||| ||||||| |||| | ||| ||| Sbjct 8209 GATCGCGTATTCGATTCGGTAGCCGGTGATGTCGCCGTTGCTCGTGTTCGCCTGAGAGAG 8150 Query 24641 CGCTGGCCAGGCGAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTCAGCGAGCGCAC 24700 || || || | | ||| || || || ||||||| ||||| | || ||| || Sbjct 8149 TGCCGGTACCGCCATCGTGATGCGGACCGCCGACAGCTGGGCGTTGCTGATCGCGCGGAC 8090 Query 24701 CCAGGGCGT 24709 ||| || || Sbjct 8089 CCATGGGGT 8081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194733288994470