Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq10768 185 3e-42 seq24639 82.4 2e-11 >seq10768 Length=4052 Score = 185 bits (204), Expect = 3e-42 Identities = 185/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 40189 GTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAG 40248 ||||||||| ||||| || || ||||||||||| |||||||| | || || || || Sbjct 7 GTCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTTGAG 66 Query 40249 TGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTC 40307 || ||||| ||||| || || || ||| |||||| ||||||||||| |||| || | Sbjct 67 CGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCCGAACCAC 126 Query 40308 GCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCA 40367 | ||||| || ||| ||| ||||| | ||| ||||| |||||||||||| |||| || Sbjct 127 GGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCCACGATCA 186 Query 40368 GGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTG 40426 |||||||| |||||||||||||| |||||| || || ||||| | | |||| ||||| Sbjct 187 GGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGCCGCTTG 245 >seq24639 Length=757 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 39211 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCC 39270 || ||||| |||||| ||||||||| ||||| || || ||||||| |||||| || Sbjct 34 CTCGGCCATTTCCTCGGCCTTCTTCTTACCCATCGCGCGGCGCAGCAAGTCGGCGCCACC 93 Query 39271 CAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 39330 || ||| || ||| ||||||||| | | | ||||||||||||||||| |||| Sbjct 94 GAGCGAGTATCCGCCGATGATCTGCGCATC-TGCATCACCTGCTCCTGGTAGACCATGAT 152 Query 39331 CCCGTACGTC 39340 ||||| ||| Sbjct 153 GCCGTAGGTC 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160335664286490