Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq10768 149 2e-31 seq24639 91.5 5e-14 >seq10768 Length=4052 Score = 149 bits (164), Expect = 2e-31 Identities = 177/239 (74%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 39096 GTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39155 ||||||||| || ||||| || ||||||||||| |||||||| | || || || Sbjct 7 GTCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTTGAG 66 Query 39156 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACG-CGGCCAGCGAGCCAGCCGCAGAGCCGC 39214 ||||| || ||||| || || || || |||| || | ||||| || ||| | || || | Sbjct 67 CGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCCGAACCAC 126 Query 39215 GCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGA 39274 | ||||| || ||| ||| ||||| | ||||||||| |||||||||||| |||| | Sbjct 127 GGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCCACGATCA 186 Query 39275 GGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTG 39333 ||||||| |||||| ||||||| | |||| || || ||||| | |||| | || || Sbjct 187 GGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGCCGCTTG 245 >seq24639 Length=757 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177 || ||||| |||||| ||||||||| ||||| ||||| || || | |||||| ||| Sbjct 34 CTCGGCCATTTCCTCGGCCTTCTTCTTACCCATCGCGCGGCGCAGCAAGTCGGCGCCACC 93 Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237 ||| | ||| ||| | | ||||||||| | | | ||||||||||||||||| |||| Sbjct 94 GAGCGAGTATCCGCCGATGATCTGCGCATC-TGCATCACCTGCTCCTGGTAGACCATGAT 152 Query 38238 CCCGAAGGTC 38247 ||| ||||| Sbjct 153 GCCGTAGGTC 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159644769090570