Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq10768 149 2e-31
seq24639 91.5 5e-14
>seq10768
Length=4052
Score = 149 bits (164), Expect = 2e-31
Identities = 177/239 (74%), Gaps = 1/239 (0%)
Strand=Plus/Plus
Query 39096 GTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39155
||||||||| || ||||| || ||||||||||| |||||||| | || || ||
Sbjct 7 GTCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTTGAG 66
Query 39156 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACG-CGGCCAGCGAGCCAGCCGCAGAGCCGC 39214
||||| || ||||| || || || || |||| || | ||||| || ||| | || || |
Sbjct 67 CGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCCGAACCAC 126
Query 39215 GCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGA 39274
| ||||| || ||| ||| ||||| | ||||||||| |||||||||||| |||| |
Sbjct 127 GGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCCACGATCA 186
Query 39275 GGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTG 39333
||||||| |||||| ||||||| | |||| || || ||||| | |||| | || ||
Sbjct 187 GGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGCCGCTTG 245
>seq24639
Length=757
Score = 91.5 bits (100), Expect = 5e-14
Identities = 99/130 (76%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177
|| ||||| |||||| ||||||||| ||||| ||||| || || | |||||| |||
Sbjct 34 CTCGGCCATTTCCTCGGCCTTCTTCTTACCCATCGCGCGGCGCAGCAAGTCGGCGCCACC 93
Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237
||| | ||| ||| | | ||||||||| | | | ||||||||||||||||| ||||
Sbjct 94 GAGCGAGTATCCGCCGATGATCTGCGCATC-TGCATCACCTGCTCCTGGTAGACCATGAT 152
Query 38238 CCCGAAGGTC 38247
||| |||||
Sbjct 153 GCCGTAGGTC 162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159644769090570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |