Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq4411 100 4e-16 >seq4411 Length=21687 Score = 100 bits (110), Expect = 4e-16 Identities = 213/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 181330 TCGGCAAAGCCAACGGTTCGCGGTCAAGCTGTTCCTTCACCTGATCGAAGTGATTGTTGT 181389 |||||| | ||||| |||| | ||||| | |||||| |||| ||||||||||| Sbjct 3271 TCGGCAGCGGGAACGGCGCGCGCGCGAGCTGCGTTTGCACCTGTTCGAGGTGATTGTTGT 3330 Query 181390 AGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCAAGACCACATTCCAGCG 181449 | | ||| || ||| | | | ||| | || || || || || || || | ||| Sbjct 3331 ACAGATGGCAGTCGCCACCGGTCCAGATGAAGTCGCCCACATCCAGGCCGGTTTGCTGCG 3390 Query 181450 CGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGT 181509 | | || ||| |||| | ||||| |||||||||||| || | ||| | ||||| || Sbjct 3391 CCACCATATGCGTCAACAATGCGTAGCTGGCGATGTTGAACGGCACCCCGAGGAAGATGT 3450 Query 181510 CCACGGACCGCTGATTCCAAA---GGCAGGACAGTTTGTCATTGCGAACATAGAACTGGA 181566 || | || |||| ||| ||||||||| ||| | | | ||| |||||||||| Sbjct 3451 CCGCACTACGTTGAT---AAAGCTGGCAGGACAACTTGCCGTCGGCAACGTAGAACTGGA 3507 Query 181567 A-TCCGTAGTGGCACGGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAG 181625 | || | |||||||| |||| ||||| | | | ||||||||||||| || || Sbjct 3508 AGAACGCA-TGGCACGGGGGCAGCGCCATACGCGGAATCTCGCCGACATTCCATGCGGAC 3566 Query 181626 ACCATATGACGACG 181639 || || | ||||| Sbjct 3567 ACGATCAGGCGACG 3580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661046607925800