Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq13770 127 1e-24 seq9569 98.7 7e-16 >seq13770 Length=1484 Score = 127 bits (140), Expect = 1e-24 Identities = 142/187 (76%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 97343 GGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGG 97402 |||||||||| ||||| || || || | || || || || || |||||||||||||| Sbjct 1085 GGCACGTTGGCCTTGATCAGACCGGTAATGACGTCGACCGACGGTCGCTGCGTCGCCAGA 1026 Query 97403 ACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGA 97460 | || ||||| || || |||||||||||||| || || ||| | || ||| | |||| Sbjct 1025 ATCAGGTGAATGCCCGCCGCGCGCGCCTTCTGTGCAATCCGGGCGATCAGTT--CTTCGA 968 Query 97461 CTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97520 | |||||| | || ||||||| ||||| || |||||||||| ||| |||||||||| Sbjct 967 ---CCTTCTTGCCGACGACCATCATCAGGTCGGCCAGTTCGTCGATCACGACCACGATGT 911 Query 97521 AGGGGAG 97527 | || || Sbjct 910 ACGGCAG 904 >seq9569 Length=6503 Score = 98.7 bits (108), Expect = 7e-16 Identities = 124/166 (75%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 97355 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97414 ||||| || ||||||| || || || || || |||||||||||||| | || || ||| Sbjct 760 TTGATGAGTCCTGTGATGACGTCGACCGACGGGCGCTGCGTCGCCAGAATCAGGTGGATA 819 Query 97415 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97474 ||||| || |||||||||||||| | || | || |||||| || |||||| Sbjct 820 CCGGCAGCCCGCGCCTTCTGGGCCAGACGCGCGATCAGCTCCTCGA--TC-TTCTTG--C 874 Query 97475 CCGC--CCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97518 |||| |||||||||| || || |||||||||| || || ||||| Sbjct 875 CCGCCACCATCATGAGATCGGCCAGTTCGTCGATGACCACGACGAT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354159640857875