Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq35188 86.0 1e-11 >seq35188 Length=529 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/260 (69%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 234586 GTGGAGTACGTCCGTATTCCGCGTAACGTACTGGCACTGTGCATCGGTAAGTCGAC-TAT 234644 || |||||| |||| || ||||| | ||||||| | |||| | || |||||||| ||| Sbjct 165 GTCGAGTACTTCCGCATCCCGCGCAGCGTACTGACCGTGTGTCTGGGCAAGTCGACGTAT 224 Query 234645 CGCCCGTGTGGGCATCAAC-TGTCTGTGCACTCCGATCGAACCGGAATGGGAAGGCCACA 234703 ||||| ||||||| | || || || ||| ||||||| |||||||| ||| || Sbjct 225 -GCCCGCTGCGGCATCATCGTGAACGTA-ACGCCGTTCGAACCCGAATGGGA-GGCTACG 281 Query 234704 TCACCTTCGAATTCCACAACACTCTCGATCAACCGAACACCTTCTATGCCAACGAAGGTG 234763 | ||| | |||||| ||||| | ||| || |||| ||||||||||| | Sbjct 282 TGACCCTGGAATTCTCGAACACGACGCCGCTGCCGGCCAAGATCTACGCCAACGAAGGCG 341 Query 234764 TACTGCAACTGGTCTTCATCGAAGGCGATGAGCCGTGCATTACTTCGTATGCCGATCGTG 234823 | || || | ||| ||||| ||| || || || |||||| ||||| | Sbjct 342 TGGCTCAGGTGCTGTTCTTCGAATCCGACGAAGTCTGTGAGACGTCGTATAAGGATCGCG 401 Query 234824 GCGGTAAGTACCAGGGTCAG 234843 |||||||||| ||||| ||| Sbjct 402 GCGGTAAGTATCAGGGACAG 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988863682421655