Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq25497 89.7 6e-13 >seq25497 Length=733 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 78484 GCGATAATATGCGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACA 78543 ||||| ||||| || || || |||||| ||||||||||||||| | || | ||| | | Sbjct 422 GCGATCATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATA 481 Query 78544 TCAACCGAACGCTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAG 78603 || |||| ||||| ||| ||| || ||||| ||||| ||| ||||||||| Sbjct 482 TCGCCCGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAACTGGAAC 541 Query 78604 AAACAGTGACACGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACG 78663 | ||| ||||| || ||||| || ||| || | |||||||||||||||| Sbjct 542 ATGGTGTGGCACGGCATCAGGGCCATCTTCGGCAGTTCGCCCACGTTCCATGCGGAAACG 601 Query 78664 AT 78665 || Sbjct 602 AT 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568209721660800