Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08]
37,135 sequences; 47,671,809 total letters
Query= NC_029079.1
Length=75339
Score E
Sequences producing significant alignments: (Bits) Value
seq12503 156 2e-33
seq12338 91.5 7e-14
>seq12503
Length=1973
Score = 156 bits (172), Expect = 2e-33
Identities = 334/497 (67%), Gaps = 9/497 (2%)
Strand=Plus/Minus
Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302
|||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| |||
Sbjct 1801 GCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGAC 1742
Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66362
| ||| || || ||||||||| | ||||| | || |||||||||| |||
Sbjct 1741 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGAC 1682
Query 66363 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66422
||| ||| ||| || | | || | |||| || | ||| |||||| || ||||||
Sbjct 1681 ACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTG 1622
Query 66423 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66482
||||| || ||||| || || || || || ||| || | | ||||| ||||| |||
Sbjct 1621 CCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTC 1562
Query 66483 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66539
||| ||||| |||| |||||||| || | | |||| |||| ||| | |
Sbjct 1561 ATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 1504
Query 66540 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66599
||| | |||||| | ||| ||||| | || | | | || ||| | |||
Sbjct 1503 -TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTT 1448
Query 66600 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66659
|| |||| || | ||| || | | |||||| || || | |||| | |||||||
Sbjct 1447 ACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAG 1388
Query 66660 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66719
| || ||||| ||||| ||| |||||||||| || ||||||||| | ||||
Sbjct 1387 ACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAG 1328
Query 66720 AACAAGCTGGCCCCGCC 66736
||||| || ||| ||||
Sbjct 1327 AACAAACTTGCCTCGCC 1311
>seq12338
Length=2103
Score = 91.5 bits (100), Expect = 7e-14
Identities = 162/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718
||| | || |||||| | | ||||| ||||| ||| ||||| || |||||||||||
Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294
Query 66719 GAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 66778
||||||| || | |||||| |||| | || ||| | | | ||||| |||| ||
Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354
Query 66779 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 66836
|||||| || | |||| || |||| |||| ||||| | | | || ||||| |
Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412
Query 66837 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAGCCCAAGGC 66889
|| ||||||| || ||| | | |||| ||| |||||||||| ||| ||
Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 240850945645500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |