Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq12503 156 2e-33 seq12338 91.5 7e-14 >seq12503 Length=1973 Score = 156 bits (172), Expect = 2e-33 Identities = 334/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302 |||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| ||| Sbjct 1801 GCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGAC 1742 Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66362 | ||| || || ||||||||| | ||||| | || |||||||||| ||| Sbjct 1741 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGAC 1682 Query 66363 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66422 ||| ||| ||| || | | || | |||| || | ||| |||||| || |||||| Sbjct 1681 ACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGTG 1622 Query 66423 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66482 ||||| || ||||| || || || || || ||| || | | ||||| ||||| ||| Sbjct 1621 CCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTC 1562 Query 66483 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66539 ||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 1561 ATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 1504 Query 66540 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66599 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 1503 -TCTTCCTGAACCAGATTCGCCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTT 1448 Query 66600 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66659 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 1447 ACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAG 1388 Query 66660 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66719 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 1387 ACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAG 1328 Query 66720 AACAAGCTGGCCCCGCC 66736 ||||| || ||| |||| Sbjct 1327 AACAAACTTGCCTCGCC 1311 >seq12338 Length=2103 Score = 91.5 bits (100), Expect = 7e-14 Identities = 162/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 66659 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66718 ||| | || |||||| | | ||||| ||||| ||| ||||| || ||||||||||| Sbjct 236 CGCGAGCGTGAAGGAGCG-GCTGAGGTGGTCGGTAACGAAACCCGCGTCAAGGTCGTCAA 294 Query 66719 GAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCAT 66778 ||||||| || | |||||| |||| | || ||| | | | ||||| |||| || Sbjct 295 GAACAAGGTGTCGCCGCCGTTCCGCGAAGCGATTTTCGACATTCTCTACGGTCAGGGTAT 354 Query 66779 CTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCGCAGGG--CCTGGTGAAGAAGTCG 66836 |||||| || | |||| || |||| |||| ||||| | | | || ||||| | Sbjct 355 CTCGCGCGAAGGCGAAATCATCGATCTGG--GTGTCAACGCGAAGATCGTCGAGAAGGCC 412 Query 66837 GGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAGGGCAAGCCCAAGGC 66889 || ||||||| || ||| | | |||| ||| |||||||||| ||| || Sbjct 413 GGTGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGC 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240850945645500