Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq22515 212 6e-50 seq25497 118 9e-22 seq4411 93.3 4e-14 >seq22515 Length=820 Score = 212 bits (234), Expect = 6e-50 Identities = 350/498 (70%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 34346 GGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGC 34405 || || || || | |||||||| || || | | || ||||| | |||||| | || Sbjct 2 GGATCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGGGAAGTTGGCGACCTCGGA 61 Query 34406 CCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGAC 34465 ||||||||||| ||||||||| | || ||||| || |||| || | | || ||| Sbjct 62 CCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGACATGCACGCCGAC 121 Query 34466 TATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524 || | || ||||| | ||||||||| || | | || || |||| || || || | Sbjct 122 TACACTGGTCAGGGCGTGGACCAGCTCGCTG-AGGTTATTGACAAGCTGC-GCACAAATC 179 Query 34525 TGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGC 34583 || ||| | |||||||| ||| |||||||| ||| ||||||| | |||||||| Sbjct 180 CGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCAATGAGATGGCGC 239 Query 34584 TCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGC 34643 |||| |||||||||| ||||||| |||||||| || | || ||| ||||||||||| Sbjct 240 TCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTGTCCTGCCAGA 299 Query 34644 TCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTC 34703 | || || || |||| |||||||| | || |||||||||||||| || || ||||| Sbjct 300 TGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATCGCCAGCTACGCGT 359 Query 34704 TGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGT 34763 |||| ||| |||| || || || || || ||||| ||| | || | |||| Sbjct 360 TGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAGTTTGTCC--ACGT 417 Query 34764 --TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACG 34821 | || ||||| || | || || ||||| |||||| ||||| || ||||| || Sbjct 418 TATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCCGCTCCAGAAGCAGCTTACTCG 477 Query 34822 AGAGCCCCGACCGTTCCC 34839 | ||| || |||||||| Sbjct 478 ATCGCCGCGCCCGTTCCC 495 Score = 212 bits (234), Expect = 6e-50 Identities = 350/498 (70%), Gaps = 8/498 (2%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || ||| ||| ||||| || ||||| |||||| ||||| || || Sbjct 495 GGGAACGGGCGCGGCGATCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATAC 436 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| || || || || | Sbjct 435 ACGTGGGCATCACCAATAACGT--GGACAAACTCGCCAGGCTTCAGTCCACTCACCTGTG 378 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| ||| |||| ||||| || || |||||||||||||| || | ||||||| Sbjct 377 CTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTGAACGGCACGCCAAGTCCCATGT 318 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||||| ||| || | || |||||||| ||||||| Sbjct 317 CGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGA 258 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 257 ACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 198 Query 6804 CGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 |||||| | ||| || | || || || |||| || || | | || |||||||| Sbjct 197 CGATCCGACGGTCGGTCGGATTTGTGC-GCAGCTTGTCAATAACCT-CAGCGAGCTGGTC 140 Query 6862 CGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCA 6921 | | ||||| || | ||||| || | | || |||| || ||||| || | ||| Sbjct 139 CACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCA 80 Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| ||||||||||| || | |||||| | ||||| || | | || || |||| Sbjct 79 CTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTC 20 Query 6982 CAGAAAGTCTCGAGACCC 6999 |||| | || || || || Sbjct 19 CAGATACTCCCGCGATCC 2 >seq25497 Length=733 Score = 118 bits (130), Expect = 9e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| || |||| || ||||| || |||||| || | | |||||||||||| Sbjct 299 AGCTTCGGCAACGCACGCGGCTCGCGCGCCAGCTGCTTCTGCGCTTGTTCGATGTGGTTC 358 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 || | |||||||| |||| |||||||| | || || ||| ||| ||| Sbjct 359 GAATACAGGTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACC 418 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||| | |||||||| ||||| || || || |||||||| | || | Sbjct 419 TGGGCGATCATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAA 478 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || ||||| || || || |||||||| || || | || ||||| |||||||| ||| Sbjct 479 ATATCGCCCGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGCCACGTAGAACTGG 538 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 | | |||||||||||| || |||||| Sbjct 539 AACATGGTGTGGCACGGCATCAGGGCCATC 568 Score = 118 bits (130), Expect = 9e-22 Identities = 188/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| || |||||||||||| | | ||| |||||||| ||||| || | || || Sbjct 568 GATGGCCCTGATGCCGTGCCACACCATGTTCCAGTTCTACGTGGCGAACGGAAAACTCTC 509 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||| || || || ||||| || || | || | |||||||| || || || Sbjct 508 GTGCCAGCTGTACCAGCGCTCGGGCGATATTTTCCTCGGCATCCCGTTCAATATCGCCAG 449 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| |||||||| | |||||||| || ||| ||| ||| || || | || Sbjct 448 CTACGCACTGCTCACCCATATGATCGCCCAGGTCACCGGGCTGGAAGTGGGCGAATTCGT 389 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 |||||| |||| |||||||| | || |||||||||||| | | || ||||| Sbjct 388 GCATACCCTGGGCGATGCGCACCTGTATTCGAACCACATCGAACAAGCGCAGAAGCAGCT 329 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 | || ||||| || |||| || |||| Sbjct 328 GGCGCGCGAGCCGCGTGCGTTGCCGAAGCT 299 >seq4411 Length=21687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || | ||| | ||| | || ||||| || || ||||||||||||||||| | Sbjct 3387 TGCGCCACCATATGCGTCAACAATGCGTAGCTGGCGATGTTGAACGGCACCCCGAGGAAG 3446 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | |||||||| ||||||||||||| || || | || |||||||| ||| Sbjct 3447 ATGTCCGCACTACGTTGATAAAGCTGGCAGGACAACTTGCCGTCGGCAACGTAGAACTGG 3506 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 ||| | ||||||||||| |||||||| Sbjct 3507 AAGAACGCATGGCACGGGGGCAGCGCCAT 3535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| ||||||||||| | ||| ||| |||||||| || | || || ||||| Sbjct 3535 ATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCTACGTTGCCGACGGCAAGTTGTCC 3476 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| |||||||| | ||||| | ||||||||||||||||| || || Sbjct 3475 TGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCGCCAGC 3416 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || | ||| | ||| | || || Sbjct 3415 TACGCATTGTTGACGCATATGGTGGCGCA 3387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448054322197200