Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6860 187 6e-42 seq2070 145 2e-29 seq18161 134 3e-26 seq13356 131 4e-25 seq34653 118 3e-21 seq15412 102 2e-16 seq22877 100 7e-16 >seq6860 Length=2744 Score = 187 bits (206), Expect = 6e-42 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||| | ||||| | || || | | Sbjct 2358 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTGTTGGTACAACTTTATCACTTTT 2417 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | || ||| ||| | || Sbjct 2418 AATTAGAATGGAATTAGCACAACCTGGTAATCAAATTTTAATGGGAAATCATCAATTATA 2477 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || ||| | || || ||||||||| | ||| |||||||||| |||||||| | | Sbjct 2478 TAATGTAATTGTAACTGCACATGCCTTTATAATGGTTTTCTTTTTAGTTATGCCTGCCTT 2537 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||||||||| ||||||||||| Sbjct 2538 AATTGGTGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGTGCTCCAGATATGGCTTT 2597 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || ||||| |||||||| ||| |||| || | ||||| Sbjct 2598 TCCACGTATGAATAATATTAGTTTTTGGTTATTACCTCCAGCTTTATT 2645 >seq2070 Length=5564 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 1069 ACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 1128 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 1129 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 1188 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||| | ||| || | |||||||| | Sbjct 1189 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 1248 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||||||||||| || || | ||| | |||||| Sbjct 1249 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 1291 >seq18161 Length=991 Score = 134 bits (148), Expect = 3e-26 Identities = 195/273 (71%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| || || |||| ||||| ||| | ||||| ||| ||||| | || Sbjct 206 ACATTATACTTGATGTTTGCATTATTTTCAGGTTTAATAGGAACTGCTTTTTCAGTAATA 265 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 ||||| ||||||||| | | || ||| ||| | || || | ||| |||| |||| Sbjct 266 ATAAGATTAGAATTATCAGGACCAGGTGTACAATTTTT-AGCAG--ATAACCAATTTTAT 322 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || || ||||| || |||||| | | ||||| |||||| | || ||||| | | Sbjct 323 AATAGTACAATTACAGCTCATGCCATATTAATGATATTCTTTATGGTAATGCCAGCATTA 382 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| |||||||| |||| || | || ||| | |||| | ||| |||||||| ||| Sbjct 383 ATAGGAGGTTTCGGTAATTTCTTATTACCATTATTAGTTGGAGGTCCAGATATGGCCTTT 442 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||||| ||||| ||||||||||| |||||| || Sbjct 443 CCAAGACTTAATAATATAAGTTTCTGATTATTA 475 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || || ||||||||||||||||| | | |||||||| || || |||| Sbjct 886 TTCAGGATGTCCGAAGAATCAGAATAAATGTTGGAATAATATAGGATCACCACCACCTGC 827 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| || ||||||||| |||||||| |||||||| Sbjct 826 TACTTCAAAGAATGAAGTATTAAAGTTTCTATCTGTTAAAAC 785 >seq13356 Length=1599 Score = 131 bits (144), Expect = 4e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct 34 GAAAATTTGTCCATCAGTAATTGATATAACATTAGTTGGGATATAAGCAGAAACATCACC 93 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| ||| || ||||||| |||||||| Sbjct 94 AGCTTGAGTTTCAATAATTGGTAAAGCTGTTAATGAACCTCCACCAATTTTTTTATT 150 >seq34653 Length=539 Score = 118 bits (130), Expect = 3e-21 Identities = 103/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 241 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 182 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| |||||||||||||| | Sbjct 181 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 123 Query 6865 GTAAT 6869 ||||| Sbjct 122 GTAAT 118 >seq15412 Length=1236 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 tAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 443 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 384 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 383 GTAACATGATGTATAGGGTCTGACAC 358 >seq22877 Length=809 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 622 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 681 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || ||||||||||||||||| | |||| ||||||||||||||| Sbjct 682 TCCAGGGGCCTCGTTAGGGCAAAAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 741 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 742 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191963802971690