Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq25497 141 8e-29 seq22515 127 2e-24 >seq25497 Length=733 Score = 141 bits (156), Expect = 8e-29 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 29674 GTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29733 ||| ||||| |||||||| || || || || ||| ||| ||||||||||| || || || Sbjct 367 GTGCGCATCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGAT 426 Query 29734 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCC 29793 ||| | ||||| || | |||||||||||| || || || | ||||| || || || Sbjct 427 CATATGGGTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCC 486 Query 29794 TGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACATGG 29852 || | |||||| |||||||||||||| | |||| |||| |||||| ||||| |||||| Sbjct 487 CGAGCGCTGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGG 545 Query 29853 CATGGCACGGAGGAAGGGCCAT 29874 |||||||| |||||||| Sbjct 546 TGTGGCACGGCATCAGGGCCAT 567 >seq22515 Length=820 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || || |||| ||| || ||||| ||||| || | |||||||||||| || Sbjct 459 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 400 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || | || || || |||| ||| || | | ||||||||||||||| Sbjct 399 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTG 340 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||| ||| Sbjct 339 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCG 280 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCAT 29874 ||| |||||| ||||| | ||||| |||||||| || || ||||| Sbjct 279 TCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405979377516610