Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq22515 140 2e-28 seq25497 125 5e-24 >seq22515 Length=820 Score = 140 bits (154), Expect = 2e-28 Identities = 296/436 (68%), Gaps = 12/436 (3%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 471 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 412 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 411 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 352 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 351 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 292 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || ||| ||||| ||||| || | ||||||||| || || ||||| Sbjct 291 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 233 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 232 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 176 Query 27425 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 175 TGTGCGCAGCT--TGTCAATAACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 118 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| |||||| ||||| | ||| ||||| ||||| |||||||| Sbjct 117 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 58 Query 27544 AGGTCTCCCTCTTCCC 27559 ||||| || |||||| Sbjct 57 AGGTCGCCAACTTCCC 42 >seq25497 Length=733 Score = 125 bits (138), Expect = 5e-24 Identities = 176/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCG---GTTCCACGTGATCCAGGTAGACGTGAGCG 27174 ||||| | | | ||||| |||| ||| |||| | ||| | | || | ||| || Sbjct 317 GGCTCGCGCGCCAGCTG---CTTCTGCGCTTGTTCGATGTGGTTCGAATACAGGTGCGCA 373 Query 27175 TCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTAC 27234 || |||||||| || || || || ||| ||| ||||||||||| || || ||||| | Sbjct 374 TCGCCCAGGGTATGCACGAATTCGCCCACTTCCAGCCCGGTGACCTGGGCGATCATATGG 433 Query 27235 GTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTC 27294 ||||| || | |||||||||||| || || || | ||||| || || ||||| | | Sbjct 434 GTGAGCAGTGCGTAGCTGGCGATATTGAACGGGATGCCGAGGAAAATATCGCCCGAGCGC 493 Query 27295 TGGTAGAGCTGACACGAGAGCTCTCC-ATCGCTTACGTAAAACTGACATATGGCGTGGCA 27353 ||||| ||||| |||||||| | ||| |||| ||||| ||||| | |||| |||||| Sbjct 494 TGGTACAGCTGGCACGAGAGTTTTCCGTTCGC-CACGTAGAACTGGAACATGGTGTGGCA 552 Query 27354 CGG 27356 ||| Sbjct 553 CGG 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369339967392185