Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq7137 751 0.0 >seq7137 Length=12292 Score = 751 bits (832), Expect = 0.0 Identities = 1050/1473 (71%), Gaps = 47/1473 (3%) Strand=Plus/Plus Query 21882 GGGAGGGGGGTA-TCGAAAGTCTGGAAC-TTTTGAGCCCCGAACGACGGGGGGAGCCAAA 21939 ||| |||||| || ||| | || ||| ||||| ||| | ||| | | | || |||| Sbjct 6224 GGGTGGGGGGAGGTCAAAACTTTGAAACGTTTTGCTCCCGGCACGG-GCGCGTAGTCAAA 6282 Query 21940 TTTTCGCACCGTCAAAATTCTATTTTGAAAATGTGAGGCTCG---ATTT-ATGGGG-CGG 21994 |||||||||||||||||||| | || | ||||| | | || | |||| ||| Sbjct 6283 TTTTCGCACCGTCAAAATTCGAAAATGGTTTTCTGAGGATGGTAAATGACACGGGGACGG 6342 Query 21995 AAGAGCACGCCTCCGCACCTCAAGGTTCTGGCAGGCACTGATCGCCCGGATCGCGATGTG 22054 ||| ||| |||||||||||||||| |||| || |||||||| || |||||||| ||| Sbjct 6343 AAGCCTACGGCTCCGCACCTCAAGGTATTGGCCGGGACTGATCGGCCTGATCGCGAGGTG 6402 Query 22055 CCGGATGCACCAGAGTTCGATCTGATCCAAGAATTCCCAGAGCCACCGATGCACCTGAAT 22114 |||||||||| ||| ||||||||| | ||||| || || |||||||| |||||| Sbjct 6403 TCGGATGCACCTTCGTTTGATCTGATCGACAGTTTCCCGGAACCGCCGATGCATCTGAAT 6462 Query 22115 CGAGACGGCGCCGAAATGTGGAACCAGCTCGGACCTCAGTTGGTTGCCGCGAAGGTTCTG 22174 | ||| || || |||||||| | || || || || |||| || ||| || Sbjct 6463 CCAGATGGGATGGAGATGTGGAATCGACTGGGGCCGCAACTGGTGAAAGCAGCGGTGCTA 6522 Query 22175 CAGGTCGTCGACCTGTACTCGCTAGAGCAGCTTTGCTTCGCCTGGCAGTGTTTCCGCAAG 22234 |||||||| ||||| ||| |||| || |||||||||||| | |||||| |||||| || Sbjct 6523 CAGGTCGTTGACCTCTACGCGCTTGAACAGCTTTGCTTCTCGTGGCAGCAATTCCGCCAG 6582 Query 22235 AAGGCGCGTGCCGATATGGAGGCGACCGCCGCCGAGCAAACCGCTCTCAAGGCGCTTTTT 22294 || ||| || | |||| |||||| | ||| | || || ||||| || || Sbjct 6583 AAAGCGAAAGCGGGCATGGGACTGACCGCGTCTGAGGACCAGGCGCTTAAGGCTCTGTTC 6642 Query 22295 TCTGAGTTCGGAATGACTCCGGCCAGTCGCCGCAAGGTTTCGTCTGCCGGCGAGAAGCAG 22354 || ||||| || ||||| || || || |||||||| ||| || || || |||| | Sbjct 6643 TCCGAGTTTGGCATGACACCAGCAGCACGTCGCAAGGTGTCGAGCGCAGGAGAAAAGCCG 6702 Query 22355 GCCGGCAATCCATTTGCGAAGAATGGGAGGCGCGGTGCGTGATTACGTCAAAATCGCCCT 22414 |||| ||| || || || ||| | || |||||||||||||| || ||||| Sbjct 6703 ACCGGAAATAAGTTCGCAGGTAACGGGCGCCGAAGTGCGTGATTACGTAAAGATCGCGAC 6762 Query 22415 CGACTATGCCAAAGCAGCAATCGCCGATAAGAGTCGTAAGAAGCATGGTCTACTGATACG 22474 |||||||||||| | ||| |||| || |||| || |||||| ||| ||||| | Sbjct 6763 CGACTATGCCAAGGAAGCCGTCGCTGACAAGAAGCGCAAGAAGTTTGGCAAGCTGATTAG 6822 Query 22475 TCAGGCTGCAAAGCGGTTTGTCGACGATCTGAAGCGGGCGAAAAAGAAGTCTTGTCCGTT 22534 || || | |||| || |||| || || ||||||||||||||| | | || || Sbjct 6823 GCAAGCATCTCAGCGTTTCCTCGATGACCTTAAGCGGGCGAAAAAGCGCGGTAGCCCATT 6882 Query 22535 CTTCTTCGATGAGTGGCATGCCAACGATGCATGCGAATTCATCGAGAAGCTGCCCCACGT 22594 | | ||||| || ||||||||| ||| || ||||| ||||| |||||||| || ||||| Sbjct 6883 CATTTTCGACGACTGGCATGCCTGCGACGCTTGCGATTTCATTGAGAAGCTTCCGCACGT 6942 Query 22595 CGAGGGGAAGTGGGATACGCCTACGATCGTTATGCACCCGTCGCACGTCTTCTTTGTCGT 22654 ||||| |||||||| ||||| || || |||| | ||| || |||| || ||||| Sbjct 6943 AGAGGGTAAGTGGGAAACGCCGGACATTGTCCTGCATCGGTCCCATATCTTTTTCGTCGT 7002 Query 22655 GCAGCTCTTCGGGTTCCGCAAGCGCGAGTGGATTCAGGTAGATGGCTGGTCCGACGACGG 22714 ||||| ||||| ||||| || || || ||| Sbjct 7003 CCAGCTTTTCGGCTTCCGGAATCGAGA------------------------------CGG 7032 Query 22715 CCGGTTCTATCCGCGCCGATTCACATCGGCCCTGTTCGCGGTGGCCAGGAAGAACGCCAA 22774 | ||| ||||| ||||| || ||| |||| || ||||| |||||||||| || Sbjct 7033 C-GGT--------CGCCGTTTCACGTCAGCCTTGTTTGCCGTGGCGCGGAAGAACGCGAA 7083 Query 22775 GAGCACCTTGTCTTCAAGCATTCTGCTGTACTGCGAATGCTGCGAGCCGGAGGAGGGCGC 22834 ||| | | | || ||||| |||||| | ||||||||| ||| || || Sbjct 7084 ATCCACGCTAGCGGCGGCGATCCTGCTTTACTGCCAGTGCTGCGAGGATGAGCCTGGAGC 7143 Query 22835 TCAGGTAATCAGCGCGGCGACGACGTTTCCACAAGCTAGCATCATCTTCAATGTTGCAAA 22894 ||||| |||||||| |||||||||||||| || || ||||||||| || ||||| Sbjct 7144 GCAGGTCATCAGCGCTGCGACGACGTTTCCGCAGGCATCGATCATCTTCGGCGTAGCAAA 7203 Query 22895 GCGCATGGTTGAAAAGACCCCAGCGCTGCGCGAGGCCTTCGGCCTGGAGACGTGGGCTAA 22954 | |||||||| |||||| | |||| | ||| ||||| |||||| ||||| || Sbjct 7204 GAAGATGGTTGAGAAGACCGGTGATTTGCGAGCGGCGTTCGGTCTGGAGGTCTGGGCAAA 7263 Query 22955 GGCGATCACTCGTTTCGAGACGGGCGCCACCTTCAAGCCGATTCACGCGAAGGCCAGCAC 23014 | |||| | || |||||| | || ||||||||||||||||| ||||| || Sbjct 7264 GTCGATTTCGCGCGCCGAGACACTGGGCAGTTTCAAGCCGATTCACGCCAAGGCTTCGAC 7323 Query 23015 GCAGGACGGTCTGAACCCGTCGCACGTCGGTCTCGACGAGATCCATGCGCACAAGAGCGC 23074 |||||||||| ||||||| |||||||| ||||| ||||| ||||| || |||||| || Sbjct 7324 GCAGGACGGTTTGAACCCCTCGCACGTTGGTCTGGACGAAATCCACGCTCACAAGTCAGC 7383 Query 23075 TGACCTGCTGAACGTCCTGACCTCGGCGGCCGGCGCCCGCGGCAACCCGCTGTGGCTGTA 23134 |||||||||||||||||| || || ||||| || || ||| |||| || |||||||| || Sbjct 7384 TGACCTGCTGAACGTCCTAACGTCAGCGGCGGGTGCACGCAGCAATCCCCTGTGGCTTTA 7443 Query 23135 CACCACTACCGAGGGTTACACCAACCCGGGGCCGTGGGGCGAGATGCGGCAGTTCGCGAA 23194 ||| || |||||||| || || || || || || |||| ||||| ||||||||||||| Sbjct 7444 CACGACGACCGAGGGATATACGAATCCCGGTCCTTGGGCAGAGATAAGGCAGTTCGCGAA 7503 Query 23195 GCGGCTGCTGGCGGGCGTCTTCGGTACCACGGCTGACCACTTCCTGGTGGTCTTCTACGC 23254 | |||||||| ||||| ||||| || || || || |||||| |||| ||||| ||||| Sbjct 7504 GAAGCTGCTGGATGGCGTATTCGGAACGACCGCCGATCACTTCTTGGTCGTCTTTTACGC 7563 Query 23255 CGTCGACGAAGAGAACAAGACCCTCAAGATCAAGGCGGACGACGAGTTCGACGAGCGGGT 23314 |||||| |||||| | || || | |||||||| ||||| || || |||||| | Sbjct 7564 CGTCGATGAAGAGGATCAGGCCGCCGGCATCAAGGCTGACGATGACTTTGACGAGTCTGC 7623 Query 23315 CTGGGTAAAGGCCAATCCGCTCATGGATGCCAA 23347 |||| | ||||| |||||||| ||||| ||||| Sbjct 7624 CTGGATCAAGGCGAATCCGCTAATGGACGCCAA 7656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133806568198710