Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq4411 132 7e-26 >seq4411 Length=21687 Score = 132 bits (146), Expect = 7e-26 Identities = 234/337 (69%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 99839 GTTCCTGACCGTCAGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGG 99898 ||| | ||| | |||| || || |||||||||||||| || || || | ||| | ||| Sbjct 3496 GTTGCCGACGGCAAGTTGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGG 3437 Query 99899 GTGCCGTTTAATATTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAAC 99958 |||||||| || || || ||||| ||||||| || ||| | || ||||| | | Sbjct 3436 GTGCCGTTCAACATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGC 3377 Query 99959 ATGACCGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTG 100018 || ||||| || ||| ||||| | ||||| ||| ||||||||||| || || || Sbjct 3376 CTGGATGTGGGCGACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTC 3317 Query 100019 GAACAAACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAA 100078 ||||| | || ||| | | || || ||| ||| | || ||||| ||| Sbjct 3316 GAACAGGTGCAAACGCAGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCG 3257 Query 100079 CGTAAGCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGAC 100138 || ||||| || || |||||||| || ||||| || |||||| | | || ||||| Sbjct 3256 CGCAAGCCCGATTCGATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAA 3197 Query 100139 CCGCATCCTGCA-ATCAAAGCACCGGTCGCGATATGA 100174 ||||||| ||| ||| |||| ||||| || ||||| Sbjct 3196 GCGCATCC-GCACATC-AAGCGCCGGTGGCCGTATGA 3162 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 ||||| ||||| || || || | || | ||||| | |||||||| ||| | ||||| Sbjct 3898 GACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAG 3839 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGAACTG 99322 ||||| || ||||| || || || || ||||| ||||| | ||||||||| Sbjct 3838 GAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTG 3779 Query 99323 CTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAACTATT 99382 |||||||||||| ||||| ||||| || ||||| | || || || || | || Sbjct 3778 CTGTGGTTCCTGCAAGGCAGCACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATC 3719 Query 99383 TGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGTGGCGG 99442 ||| |||||||| | | || || || ||||| || || ||||| || ||||| Sbjct 3718 TGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCGC 3659 Query 99443 TCTTGGCC 99450 || ||||| Sbjct 3658 TCGTGGCC 3651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716131426367000