Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq4411 132 7e-26 >seq4411 Length=21687 Score = 132 bits (146), Expect = 7e-26 Identities = 222/320 (69%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 100168 TGTCCTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCG 100227 ||||||| || || || |||||||| |||||| | ||| | || ||||||||||| |||| Sbjct 3480 TGTCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCG 3421 Query 100228 CGTCGTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACT 100287 | ||||| || || || ||| | || || ||| || | ||| |||||||||| Sbjct 3420 CCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGACT 3361 Query 100288 TCGTCTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACTC 100347 || ||||||| ||||| ||| |||||||| ||| || || |||||| | || | Sbjct 3360 TCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAACGC 3301 Query 100348 AGCTAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCTA 100407 |||| | ||| | ||| | | | || || | | ||| || ||||| || || | Sbjct 3300 AGCTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTCGA 3241 Query 100408 TCTTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCATTA 100467 ||||||| || ||||| || |||||| | || | ||||| | | |||| | Sbjct 3240 TCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAGCGCA-TCCGCACATC 3182 Query 100468 AAGCGCCGGTGGCGATATGA 100487 ||||||||||||| ||||| Sbjct 3181 AAGCGCCGGTGGCCGTATGA 3162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733934358630600