Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq7430 156 2e-33 seq6339 122 3e-23 >seq7430 Length=11454 Score = 156 bits (172), Expect = 2e-33 Identities = 257/365 (70%), Gaps = 12/365 (3%) Strand=Plus/Minus Query 30992 ATGCCACGGGATTCCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCT 31051 ||||||||| |||||||||||||| || | | || ||||||||| |||| | | Sbjct 8865 ATGCCACGGCTCTCCATGCACATGTGACGGCACGACACCACGACACCGACGGCCTTCGGT 8806 Query 31052 TCCAGGTGCTCGAACAGTGCGTCCGCGATCTG-GTCTGTGAGCCGTTCCTGCACTTGCAG 31110 | |||||| | ||| || || |||| || ||| || || || |||||||||||||| Sbjct 8805 TGAAGGTGCGTCATCAGCGCTTCGGCGACTTGCGTC-GTCAGACGCTCCTGCACTTGCAG 8747 Query 31111 GCGGCGAGCATACATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTT 31170 ||| || ||| | || |||| || | ||||| |||||| ||||| ||||| Sbjct 8746 GCGACGCGCAAAGCAATCGACCAGACGCGTGAGCTTCGACAGGCCGACGATCTTGCCGTT 8687 Query 31171 CGGAATGTAGCTGATCGTGACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCAATGTGA 31230 || | |||| ||| || || ||||||| | ||| ||||| || |||||||| || Sbjct 8686 GGGCAGATAGCCGATGGTCGCCTTGCCGAAAAACGGTGCGAGATGGTGCTCGCAGTGGCT 8627 Query 31231 GTAGATGGGGATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCCGCACCGTCTTCGAA 31290 ||| | || ||| |||||||| | || | || | | ||| || ||||||||||| Sbjct 8626 GTACACCGGAATGCCGCGCACCACGATCAGTTCGTTGTATTGCTCAGCCCCGTCTTCGAA 8567 Query 31291 CACCTTCAGGATGGCCTTC----GGATCCTTGCCGTAACC-GCCGCACCAGTGGCGCCAG 31345 ||||| || | |||| ||||||| |||||||| |||| ||| |||||||| Sbjct 8566 GACCTTGAGCA----CTTCGGCGGGATCCTGACCGTAACCTGCCG-TCCACTGGCGCCAC 8512 Query 31346 GCCTT 31350 ||||| Sbjct 8511 GCCTT 8507 >seq6339 Length=679 Score = 122 bits (134), Expect = 3e-23 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 241 CCATGCACATGTGCGTGGCCTCAATGACCACGGCCACGCCCTTGGGCTCAATGACGCCCA 300 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| ||||||||||| || | | Sbjct 301 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAGGCGGCGCGAGAAGA 360 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || || | | |||||||| ||||||| Sbjct 361 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCGAGCACCTTGCCGTTCGGGATGTAGCC 418 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 419 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 476 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 477 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187207009383360