Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq4411 300 9e-77 seq25497 152 3e-32 seq22515 86.0 4e-12 >seq4411 Length=21687 Score = 300 bits (332), Expect = 9e-77 Identities = 530/755 (70%), Gaps = 32/755 (4%) Strand=Plus/Minus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || ||||| ||||| ||||||| ||||||| ||| |||| | |||||| Sbjct 3898 GACCGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAG 3839 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 || || |||||||| ||||||||||| || ||| |||||||| | | | ||||||| Sbjct 3838 GAAGGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTG 3779 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCA----ACGACAACGGCGTCAC 1011 ||||||||||| ||| ||| |||||| |||| | || ||||||||| | Sbjct 3778 CTGTGGTTCCTGCAAGGCAGCACCAACGTG----CGCTATTTGCAGGAAAACGGCGTCTC 3723 Query 1012 CATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTG 1071 ||||||| |||| ||||| || |||| || | ||||| || |||||||||||||| || Sbjct 3722 CATCTGGAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATG 3663 Query 1072 GCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGT 1131 ||| |||| | | | || | ||| || |||||||| || ||| Sbjct 3662 GCGCTCGTGGC----CAACACCCGATGGCGGTCAC--ATCGACCAGATTACGCAGATCGT 3609 Query 1132 GGAGCTGCTTCGCGAGGACCCTGACTCGCGCCG---GAACGTGGTATCCGCATGGAACGT 1188 ||||| | | ||| | || |||||||| || || |||| ||||||||||| || Sbjct 3608 GGAGCAGATCCGCTCGACACCGGACTCGCGTCGCCTGATCGTG---TCCGCATGGAATGT 3552 Query 1189 CGGTGACCT-CAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCG 1247 ||| || | | ||| ||||| || | ||||||||| | |||||| | ||||| | Sbjct 3551 CGGCGAGATTCCGCGT-ATGGCGCTGCCCCCGTGCCATGCGTTCTTCCAGTTCTACGTTG 3493 Query 1248 TCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTG 1306 ||||||| | | || |||| || | || || || || |||||||| |||||||| ||| Sbjct 3492 CCGACGGCAAGTTGTC-CTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTG 3434 Query 1307 CCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTG 1366 |||||||| |||||| ||||| | | |||| ||| | |||||||| |||||||| Sbjct 3433 CCGTTCAACATCGCCAGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTG 3374 Query 1367 CGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGAC 1426 ||||| || | ||||||||||| ||||||||||| | |||||||| ||| |||| Sbjct 3373 GATGTGGGCGACTTCATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAA 3314 Query 1427 CAGGCGCTGATGCAGCTC-CGCCGACGACCGCGGCCCTACCCGAGGCTCGTGCT-ACAC- 1483 |||| || | ||||||| ||| || ||| || |||| ||| | | | | | Sbjct 3313 CAGGTGCAAACGCAGCTCGCGCGCGCG-CCGTTCCCGCTGCCGAAGCTTGAGATCGCGCG 3255 Query 1484 CACGCGCCG--TCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACC 1541 || || ||| ||||||||||| ||| || |||| || |||| || | ||||| Sbjct 3254 CAAGC-CCGATTCGATCTTCGATTACAAGTTCGAGGACTTCCATATCATCGGATACGAAG 3196 Query 1542 CGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 |||| ||| ||||| |||||||||||||| ||| Sbjct 3195 CGCATCCGCACATCAA-GCGCCGGTGGCCGTATGA 3162 >seq25497 Length=733 Score = 152 bits (168), Expect = 3e-32 Identities = 297/433 (69%), Gaps = 7/433 (2%) Strand=Plus/Minus Query 1149 ACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGG 1208 |||| || |||||||| | || |||||||||||||| || || || | |||| Sbjct 623 ACCCGGATTCGCGCCGCCTTATCGTTTCCGCATGGAACGTGGGCGAACTGCCGAAGATGG 564 Query 1209 CACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC 1268 | || |||||||||| |||||||||| | ||||| | |||| |||||| | Sbjct 563 CCCTGATGCCGTGCCACACCATGTTCCAGTTCTACGTGGCGAACGGAAAACTCTCGTGCC 504 Query 1269 AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACG 1328 || | ||||||||| | || || |||||||| | ||||||||||||||| |||| Sbjct 503 AGCTGTACCAGCGCTCGGGCGATATTTTCCTCGGCATCCCGTTCAATATCGCCAGCTACG 444 Query 1329 CGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGA 1388 | || ||| | || ||| |||| ||| |||| ||| ||||| || | | | Sbjct 443 CACTGCTCACCCATATGATCGCCCAGGTCACCGGGCTGGAAGTGGGCGAATTCGTGCATA 384 Query 1389 CCGGCGGCGACTGC-CACATCTACAACAACCACGTCGACCAGGCGCTGATGCAGCTCCGC 1447 || ||||| ||| ||| | || |||||| |||| || |||| || |||||| || Sbjct 383 CCCTGGGCGA-TGCGCACCTGTATTCGAACCACATCGAACAAGCGCAGAAGCAGCT-GGC 326 Query 1448 CGACGA-CCGCGGCCCTACCCGAGGCTCGTGCTACACC---ACGCGCCGTCGATCTTCGA 1503 ||| ||||| | | |||| ||| ||||| ||| | | | | |||||||| Sbjct 325 GCGCGAGCCGCGTGCGTTGCCGAAGCTGGTGCTGAACCCGGAAGTGAAGAGCATCTTCGA 266 Query 1504 CTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAAGGCGCC 1563 | ||| | |||| | | |||| ||||||| ||||||||| |||||||||| || Sbjct 265 TTTCCGCTTCGAGGATGTGTCGATCGTCGACTACGATCCGCACCCGGCGATCAAGGCACC 206 Query 1564 GGTGGCCGTCTGA 1576 || ||||||||| Sbjct 205 TGTCGCCGTCTGA 193 >seq22515 Length=820 Score = 86.0 bits (94), Expect = 4e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 188 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 245 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTAC 1276 |||||||||| | | |||| | ||||| | ||||||| | | || ||| ||| | ||| Sbjct 246 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGCGAGTTGTC-CTGCCAGATGTAC 304 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCG 1330 |||||| || |||||| || || ||||||||||| |||||| |||||| Sbjct 305 CAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATCGCCAGCTACGCG 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295997176108635