Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq10768 170 6e-38 >seq10768 Length=4052 Score = 170 bits (188), Expect = 6e-38 Identities = 182/239 (76%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 40181 GTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGAT 40240 ||||||||| ||||| || || ||||||||||| |||||||| | || || | || Sbjct 7 GTCGGGCATCGACACACGTTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTTGAG 66 Query 40241 GGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCAC 40299 ||||| || || || ||||| || ||| |||||| ||||||||||| |||| |||| Sbjct 67 CGGGTCGAGATCGGTAATGCCCAGCGCATACGGCGACGAGCGAACCGGCCCCCGAACCAC 126 Query 40300 GTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCA 40359 | || ||||| ||| ||| ||||| | ||| ||||| |||||||||||| |||| || Sbjct 127 GGCCAGGTCCTACCGGCACACCGTTGTTCTTCGCCCACTGGATGAAGTCGGCCACGATCA 186 Query 40360 GGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTG 40418 |||||||| |||||| |||| || |||||| || || ||||| | | ||| ||||| Sbjct 187 GGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGCCGGTCTCGAAATCGAGCCGCTTG 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160070181410280