Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20rubi_20[genbank_20GCA_5F000687305.1_202014-05-08] 37,135 sequences; 47,671,809 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq4411 163 4e-35 >seq4411 Length=21687 Score = 163 bits (180), Expect = 4e-35 Identities = 216/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||| || || ||||| |||| |||| | |||| | || | ||| ||||| Sbjct 3955 ATGAAACAGTACCTAGACTTCATGCGCCATGTACTCGAACATGGCACAGACAAAACCGAC 3896 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 || || || || ||||| | ||| || ||||| ||||||||||| || | || ||| Sbjct 3895 CGCACGGGCACAGGCACGCGCTCGGTGTTCGGCTATCAGATGCGCTTCGACCTGCAGGAA 3836 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || || ||||| |||||||| ||||| || ||| | || ||| | || || |||||| Sbjct 3835 GGGTTCCCGCTCGTCACCACGAAAAAAGTGCACATCAAATCGATCGTGCACGAACTGCTG 3776 Query 201971 TGGTTCCT-CATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 |||||||| || || | ||||||| | | |||||| | || ||| |||| ||||||| Sbjct 3775 TGGTTCCTGCAAGGCAG-CACCAACGTGCGCTATTTGCAGGAAAACGGCGTCTCCATCTG 3717 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 | |||||||||||||| | ||||| | || || || ||||| ||||||||| Sbjct 3716 GAACGAATGGGCGGATGCCGAAGGTGAACTCGGGCCCGTCTACGGCGCGCAATGGCG 3660 Score = 129 bits (142), Expect = 9e-25 Identities = 187/264 (71%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 202493 TCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATCGCG 202552 || || ||||| ||||| |||||||||||||| ||||| || || ||||| |||||||| Sbjct 3478 TCCTGCCAGCTTTATCAACGTAGTGCGGACATCTTCCTCGGGGTGCCGTTCAACATCGCC 3419 Query 202553 TCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGACTTC 202612 ||||| ||| || || ||| | || || || | | ||| || ||||||||| Sbjct 3418 AGCTACGCATTGTTGACGCATATGGTGGCGCAGCAAACCGGCCTGGATGTGGGCGACTTC 3359 Query 202613 GTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTCCAA 202672 ||||||| ||||| || ||||||||| ||| || || ||||| | | || Sbjct 3358 ATCTGGACCGGTGGCGACTGCCATCTGTACAACAATCACCTCGAACAGGTGCAAACGCAG 3299 Query 202673 CTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCCATC 202732 || | || | || ||| | |||||| | | ||| || ||||||||||| ||| Sbjct 3298 CTCGCGCGCGCGCCGTTCCCGCTGCCGAAGCTTGAGATCGCGCGCAAGCCCGATTCGATC 3239 Query 202733 TTCGACTACAAATTCGAAGACTTC 202756 ||||| ||||| ||||| |||||| Sbjct 3238 TTCGATTACAAGTTCGAGGACTTC 3215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787637418764600